Literature DB >> 557038

Mechanism of action of uridine diphoglucose dehydrogenase. Evidence for an essential lysine residue at the active site.

A B Ordman, S Kirkwood.   

Abstract

The oxidation of UDP-glucose by the enzyme UDP-glucose dehydrogenase (EC 1.1.1.22) from beef liver has been shown to proceed via the enzyme-bound intermediate, UDP-alpha-D-glyco-hexodialdose. The enzyme does not release this aldehyde, nor can it be trapped by reaction with hydroxylamine, thiosemicarbazide, or cyanide. Tight binding of the intermediate aldehyde can be explained by the recent observation that the essential thiol group of the enzyme forms a thiohemiacetal with the aldehyde during the course of the reaction. However, an enzyme preparation with the essential thiol derivatized with cyanide will still not release the aldehyde, indicating an additional as yet unknown binding mechanism. Derivatization ([14C]formaldehyde, followed by NaBH4 reduction) of 6 of the approximately 168 lysine residues per enzyme molecule (of six catalytic subunits) results in destruction of 47% of the enzyme activity, suggesting the involvement of an essential reactive lysine in the mechanism. Preincubation of the enzyme with UDP-glucose decreases both the loss of activity and incorporation of the label, indicating that this lysine is in the vicinity of the active site. Acid hydrolysis of the labeled preparation, followed by paper chromatography, shows that the label has a mobility, in the system used, that is identical with lysine. Elution of this spot followed by chromatography on Aminex A-5 resin showed that it contained the expected mixture of epsilon-N-methyl lysines. When enzyme that has its essential thiol derivatized with cyanide is incubated with UDP-[14C]glucose and NAD+, and then reduced with NaB3H4, a stable enzyme complex is formed which contains both labels. Acid hydrolysis of this preparation, followed by either two-dimensional paper chromatography or separation in an amino acid analyzer, results in both labels appearing in the position of lysine. It is evident that the enzyme oxidizes the UDP-[14C]glucose to the corresponding aldehyde which occurs as the Schiff's base with an essential lysine. This is then reduced by the NaB3H4 to form a secondary amine which is stable toward hydrolysis and migrates with lysine in separation procedures. As would be predicted, the enzyme can be similarly labeled by treatment with UDP-alpha-D-gluco-hexodisidose alone, followed by NaB3H4 reduction. The same hydrolysis product results from this procedure, and it behaves identically with the product formed by treating alpha-N-acetyl lysine with UDP-alpha-D-gluco-hexodialdose, reducing with NaBH4, and then hydrolyzing. This substance appears to be N5-((5-formyl-2-furanyl)methyl)lysine. When chromatographed on Aminex A-5, both the model compound and enzyme hydrolysate gave peaks corresponding to free lysine and the proposed derivative. Evidence is presented that the oxidation of UDP-glucose to the aldehyde is a concerted reaction involving the formation of the Schiff's base, rather than the formation of the aldehyde with the subsequent formation of the Schiff's base...

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Year:  1977        PMID: 557038

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  9 in total

1.  Half-sites oxidation of bovine liver uridine diphosphate glucose dehydrogenase.

Authors:  J S Franzen; P Marchetti; R Ishman; J Ashcom
Journal:  Biochem J       Date:  1978-08-01       Impact factor: 3.857

2.  UDP-glucose dehydrogenase from bovine liver: primary structure and relationship to other dehydrogenases.

Authors:  J Hempel; J Perozich; H Romovacek; A Hinich; I Kuo; D S Feingold
Journal:  Protein Sci       Date:  1994-07       Impact factor: 6.725

3.  UDP-glucose dehydrogenase activity and optimal downstream cellular function require dynamic reorganization at the dimer-dimer subunit interfaces.

Authors:  Annastasia S Hyde; Ashley M Thelen; Joseph J Barycki; Melanie A Simpson
Journal:  J Biol Chem       Date:  2013-10-21       Impact factor: 5.157

4.  Amino acid sequence of the tryptic peptide containing the catalytic-site thiol group of bovine liver uridine diphosphate glucose dehydrogenase.

Authors:  B Franzen; C Carrubba; D S Feingold; J Ashcom; J S Franzen
Journal:  Biochem J       Date:  1981-12-01       Impact factor: 3.857

5.  Structure and mechanism of human UDP-glucose 6-dehydrogenase.

Authors:  Sigrid Egger; Apirat Chaikuad; Kathryn L Kavanagh; Udo Oppermann; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2011-04-18       Impact factor: 5.157

6.  Structural basis of cooperativity in human UDP-glucose dehydrogenase.

Authors:  Venkatachalam Rajakannan; Hui-Sun Lee; Seon-Ha Chong; Han-Bong Ryu; Ji-Young Bae; Eun-Young Whang; Jae-Wan Huh; Sung-Woo Cho; Lin-Woo Kang; Han Choe; Robert C Robinson
Journal:  PLoS One       Date:  2011-10-03       Impact factor: 3.240

7.  Structural and kinetic evidence that catalytic reaction of human UDP-glucose 6-dehydrogenase involves covalent thiohemiacetal and thioester enzyme intermediates.

Authors:  Sigrid Egger; Apirat Chaikuad; Mario Klimacek; Kathryn L Kavanagh; Udo Oppermann; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2011-11-28       Impact factor: 5.157

8.  Catalytic mechanism of human UDP-glucose 6-dehydrogenase: in situ proton NMR studies reveal that the C-5 hydrogen of UDP-glucose is not exchanged with bulk water during the enzymatic reaction.

Authors:  Thomas Eixelsberger; Lothar Brecker; Bernd Nidetzky
Journal:  Carbohydr Res       Date:  2012-04-02       Impact factor: 2.104

9.  UDP-glucose Dehydrogenase: The First-step Oxidation Is an NAD+-dependent Bimolecular Nucleophilic Substitution Reaction (SN2).

Authors:  Jun Chen; Yang Yu; Jiaojiao Gao; Shulin Yang
Journal:  Int J Biol Sci       Date:  2019-01-01       Impact factor: 6.580

  9 in total

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