Literature DB >> 5016111

Enzyme kinetics. Systematic generation of valid King-Altman patterns.

C F Lam, D G Priest.   

Abstract

One of the most generally applicable algorithms for the derivation of steady-state rate equations for complex enzyme reaction mechanisms is that of King and Altman. Several modifications of this algorithm have been suggested; however, each requires the generation of numerous valid and invalid patterns and the subsequent elimination of those that are invalid. A method is presented, employing topological theory of linear graphs, for the systematic generation of only those patterns which are valid. This method is readily adaptable to use on a digital computer. An independent method for the calculation of the number of valid patterns is also presented. This calculation can be used to substantiate the accuracy of the patterns obtained. This calculation is also adaptable to computerization. Examples are included to demonstrate both the generation of patterns and the calculation of their number for specific enzyme mechanisms.

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Year:  1972        PMID: 5016111      PMCID: PMC1484093          DOI: 10.1016/S0006-3495(72)86084-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  3 in total

1.  Kinetic formulations for enzymic reactions involving two substrates.

Authors:  J T WONG; C S HANES
Journal:  Can J Biochem Physiol       Date:  1962-06

2.  A systematic approach to kinetic studies of multisubstrate enzyme systems.

Authors:  J R Fisher; V D Hoagland
Journal:  Adv Biol Med Phys       Date:  1968

3.  A simplified schematic method for deriving steady-state rate equations using a modification of the "theory of graphs" procedure.

Authors:  H J Fromm
Journal:  Biochem Biophys Res Commun       Date:  1970-08-11       Impact factor: 3.575

  3 in total
  10 in total

1.  In defence of the general validity of the Cha method of deriving rate equations. The importance of explicit recognition of the thermodynamic box in enzyme kinetics.

Authors:  C M Topham; K Brocklehurst
Journal:  Biochem J       Date:  1992-02-15       Impact factor: 3.857

2.  Computer program for the expression of the kinetic equations of enzyme reactions as functions of the rate constants and the initial concentrations.

Authors:  R Varón; B H Havsteen; M García; F García Cánovas; J Tudela
Journal:  Biochem J       Date:  1990-09-15       Impact factor: 3.857

3.  A new method for deriving steady-state rate equations suitable for manual or computer use.

Authors:  K J Indge; R E Childs
Journal:  Biochem J       Date:  1976-06-01       Impact factor: 3.857

4.  An automatic method for deriving steady-state rate equations.

Authors:  A Cornish-Bowden
Journal:  Biochem J       Date:  1977-07-01       Impact factor: 3.857

5.  The computerized derivation of rate equations for enzyme reactions on the basis of the pseudo-steady-state assumption and the rapid-equilibrium assumption.

Authors:  H Ishikawa; T Maeda; H Hikita; K Miyatake
Journal:  Biochem J       Date:  1988-04-01       Impact factor: 3.857

6.  Sodium channel permeation in squid axons. I: Reversal potential experiments.

Authors:  T B Begenisich; M D Cahalan
Journal:  J Physiol       Date:  1980-10       Impact factor: 5.182

7.  The computerized derivation of steady-state rate equations for enzyme kinetics.

Authors:  D G Herries
Journal:  Biochem J       Date:  1984-10-15       Impact factor: 3.857

8.  A general framework for thermodynamically consistent parameterization and efficient sampling of enzymatic reactions.

Authors:  Pedro Saa; Lars K Nielsen
Journal:  PLoS Comput Biol       Date:  2015-04-14       Impact factor: 4.475

9.  Generating rate equations for complex enzyme systems by a computer-assisted systematic method.

Authors:  Feng Qi; Ranjan K Dash; Yu Han; Daniel A Beard
Journal:  BMC Bioinformatics       Date:  2009-08-04       Impact factor: 3.169

10.  Characterizing the relationship between steady state and response using analytical expressions for the steady states of mass action models.

Authors:  Paul Michael Loriaux; Glenn Tesler; Alexander Hoffmann
Journal:  PLoS Comput Biol       Date:  2013-02-28       Impact factor: 4.475

  10 in total

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