Literature DB >> 4664937

Some examples of the use of computer-produced contour plots in the fitting of enzyme rate equations to reaction-velocity measurements.

J H Ottaway, D K Apps.   

Abstract

The use of computer-based isotach plots, relating reaction velocity to simultaneous variation of two substrates or effectors of an enzyme, in producing estimates of the parameters of enzyme rate equations was investigated. The computer program (;SYMAP') incorporates an interpolation algorithm, and the superiority of this over visual estimation in producing interpolated velocity values for the estimation of parameter values by conventional double-reciprocal plots is described. The usefulness of the SYMAP program in monitoring the process of fitting data obtained by simultaneous changes in two experimental variables is also described. It is shown that if the residual errors are weighted by a procedure described elsewhere (Ottaway, 1971b, 1973), the percentage error of the computed velocity is distributed evenly over a plot which contains a 100-fold variation in the concentration of one substrate and a 500-fold variation in the concentration of Mg(2+), and in which the velocity of the reaction (that catalysed by NAD kinase) varies over a 60-fold range. The two-dimensional percentage error plot was used to assess the limits within which an incomplete inhibition equation is valid, and to detect a discrepancy in an expected good fit, caused by an impurity in one of the substrates.

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Year:  1972        PMID: 4664937      PMCID: PMC1174525          DOI: 10.1042/bj1300861

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  14 in total

1.  A computer program for the determination of kinetic parameters from sigmoidal steady-state kinetics.

Authors:  H -J. Wieker; K -J. Johannes; B Hess
Journal:  FEBS Lett       Date:  1970-06-08       Impact factor: 4.124

2.  Statistical estimations in enzyme kinetics.

Authors:  G N WILKINSON
Journal:  Biochem J       Date:  1961-08       Impact factor: 3.857

3.  Kinetic studies of the interaction of pigeon-liver NAD kinase with adenine nucleotides and divalent cations.

Authors:  D K Apps; A Marsh
Journal:  Eur J Biochem       Date:  1972-06-23

4.  Kinetic studies of pigeon liver NAD kinase.

Authors:  D K Apps
Journal:  Eur J Biochem       Date:  1968-08

5.  The substrate specificity of pigeon liver NAD kinase.

Authors:  D K Apps
Journal:  Eur J Biochem       Date:  1969-01

Review 6.  The statistical analysis of enzyme kinetic data.

Authors:  W W Cleland
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1967

7.  A general strategy for parameter estimation from isosteric and allosteric-kinetic data and binding measurements.

Authors:  J G Reich; G Wangermann; M Falck; K Rohde
Journal:  Eur J Biochem       Date:  1972-04-11

8.  Standard free energy maps for the hydrolysis of ATP as a function of pH, pMg and pCa.

Authors:  K Shikama
Journal:  Arch Biochem Biophys       Date:  1971-11       Impact factor: 4.013

9.  Rat liver pyruvate carboxylase. I. Preparation, properties, and cation specificity.

Authors:  W R McClure; H A Lardy; H P Kneifel
Journal:  J Biol Chem       Date:  1971-06-10       Impact factor: 5.157

10.  A computer program for fitting data to the Michaelis-Menten equation.

Authors:  K R Hanson; R Ling; E Havir
Journal:  Biochem Biophys Res Commun       Date:  1967-10-26       Impact factor: 3.575

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  3 in total

1.  Normalization in the fitting of data by iterative methods. Application to tracer kinetics and enzyme kinetics.

Authors:  J H Ottaway
Journal:  Biochem J       Date:  1973-07       Impact factor: 3.857

2.  Use of the F test for determining the degree of enzyme-kinetic and ligand-binding data. A Monte Carlo simulation study.

Authors:  F J Burguillo; A J Wright; W G Bardsley
Journal:  Biochem J       Date:  1983-04-01       Impact factor: 3.857

3.  Studies on the mechanism and kinetics of the 2-oxoglutarate dehydrogenase system from pig heart.

Authors:  C L McMinn; J H Ottaway
Journal:  Biochem J       Date:  1977-03-01       Impact factor: 3.857

  3 in total

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