Literature DB >> 461206

Influence of nucleotide sequence on dA.dT-specific binding of Netropsin to double stranded DNA.

C Zimmer, C Marck, C Schneider, W Guschlbauer.   

Abstract

Using CD measurements the complex formation of Netropsin (Nt) with poly(dA-dC).poly(dT-dG) and its stability against high salt concentrations is compared with that of poly(dA).poly(dT) and poly(dA-dT).POLY(DT-dA). It is experimentally shown that the insertion of a dG.dC pair in dA.dT sequences strongly reduces the specific interaction of Nt with DNA duplexes. The specificity of the interaction is strongly increased by two or more consecutive thymine residues as present in thymine isostichs of double stranded DNA's.

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Year:  1979        PMID： 461206      PMCID： PMC327896          DOI： 10.1093/nar/6.8.2831

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  16 in total

Review 1.  Effects of the antibiotics netropsin and distamycin A on the structure and function of nucleic acids.

Authors:  C Zimmer
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1975

2.  Protection of particular endonuclease R. Hind III cleavage sites by distamycin A, propyl-distamycin and netropsin.

Authors:  V V Nosikov; B Sain
Journal:  Nucleic Acids Res       Date:  1977-07       Impact factor: 16.971

3.  Poly(dG).poly(dC) at neutral and alkaline pH: the formation of triple stranded poly(dG).poly(dG).poly(dC).

Authors:  C Marck; D Thiele
Journal:  Nucleic Acids Res       Date:  1978-03       Impact factor: 16.971

4.  A study of unwinding of DNA and shielding of the DNA grooves by RNA polymerase by using methylation with dimethylsulphate.

Authors:  A F Melnikova; R Beabealashvilli; A D Mirzabekov
Journal:  Eur J Biochem       Date:  1978-03

5.  Netropsin. A specific probe for A-T regions of duplex deoxyribonucleic acid.

Authors:  R M Wartell; J E Larson; R D Wells
Journal:  J Biol Chem       Date:  1974-11-10       Impact factor: 5.157

6.  The organization of highly repeated DNA sequences in Drosophila melanogaster chromosomes.

Authors:  W J Peacock; D Brutlag; E Goldring; R Appels; C W Hinton; D L Lindsley
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1974

7.  Binding of netropsin to DNA and synthetic polynucleotides.

Authors:  A S Zasedatelev; G V Gursky; C Zimmer; H Thrum
Journal:  Mol Biol Rep       Date:  1974-03       Impact factor: 2.316

8.  Conformational features of distamycin-DNA and netropsin-DNA complexes by Raman spectroscopy.

Authors:  J C Martin; R M Wartell; D C O'Shea
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

9.  Netropsin, a DNA-binding oligopeptide structural and binding studies.

Authors:  H M Berman; S Neidle; C Zimmer; H Thrum
Journal:  Biochim Biophys Acta       Date:  1979-01-26

10.  The use of netropsin with CsCl gradients for the analysis of DNA and its application to restriction nuclease fragments of ribosomal DNA from Physarum polycephalum.

Authors:  H R Matthews; E M Johnson; W M Steer; E M Bradbury; V G Allfrey
Journal:  Eur J Biochem       Date:  1978-01-16
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  19 in total

Review 1.  Sequence specificities in the interactions of chemicals and radiations with DNA.

Authors:  R J Wilkins
Journal:  Mol Cell Biochem       Date:  1984-09       Impact factor: 3.396

2.  Theoretical studies of the selective binding to DNA of two non-intercalating ligands: netropsin and SN 18071.

Authors:  K Zakrzewska; R Lavery; B Pullman
Journal:  Nucleic Acids Res       Date:  1983-12-20       Impact factor: 16.971

3.  Effect of ligand binding on the buoyant density of DNA in Nycodenz gradients.

Authors:  T C Ford; D Rickwood
Journal:  Nucleic Acids Res       Date:  1984-01-25       Impact factor: 16.971

4.  Calorimetric and spectroscopic investigation of drug-DNA interactions. I. The binding of netropsin to poly d(AT).

Authors:  L A Marky; K S Blumenfeld; K J Breslauer
Journal:  Nucleic Acids Res       Date:  1983-05-11       Impact factor: 16.971

5.  Specific interaction of netropsin, distamycin-3 and analogs with LC duplexes: reversion towards the B form of the 2'-deoxy-.2'-deoxy-2'-fluoro-hybrid duplexes upon specific interaction with netropsin, distamycin-3 and analogs.

Authors:  C Marck; N Kakiuchi; W Guschlbauer
Journal:  Nucleic Acids Res       Date:  1982-10-11       Impact factor: 16.971

6.  Cooperative stabilization of Zn(2+):DNA complexes through netropsin binding in the minor groove of FdU-substituted DNA.

Authors:  Supratim Ghosh; Freddie R Salsbury; David A Horita; William H Gmeiner
Journal:  J Biomol Struct Dyn       Date:  2012-11-16

7.  Protection of (dA.dT) cluster regions in the DNAase I cleavage of DNA by specific interaction with netropsin.

Authors:  C Zimmer; G Luck; R Nüske
Journal:  Nucleic Acids Res       Date:  1980-07-11       Impact factor: 16.971

8.  Differential stabilization by netropsin of inducible B-like conformations in deoxyribo-, ribo- and 2'-deoxy-2'-fluororibo-adenosine containing duplexes of (dA)n . (dT)n and (dA)n . (dU)na.

Authors:  C Zimmer; N Kakiuchi; W Guschlbauer
Journal:  Nucleic Acids Res       Date:  1982-03-11       Impact factor: 16.971

9.  Sequence and length dependent thermodynamic differences in heterocyclic diamidine interactions at AT base pairs in the DNA minor groove.

Authors:  Yang Liu; Arvind Kumar; David W Boykin; W David Wilson
Journal:  Biophys Chem       Date:  2007-09-06       Impact factor: 2.352

10.  Heritable fragile sites on human chromosomes. XI. Factors affecting expression of fragile sites at 10q25, 16q22, and 17p12.

Authors:  G R Sutherland; P B Jacky; E G Baker
Journal:  Am J Hum Genet       Date:  1984-01       Impact factor: 11.025
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