Literature DB >> 4530285

Threshold excitations, relaxation oscillations, and effect of noise in an enzyme reaction.

H S Hahn, A Nitzan, P Ortoleva, J Ross.   

Abstract

We study a deprotonation reaction by an enzyme with activity dependent on pH. The rate and transport equations are simplified with a number of assumptions, are analyzed according to the presence of different time scales, and are solved numerically to show relaxation oscillation and threshold excitation, for different choices of parameters. The imposition of fluctuations (noise) on the deterministic equations for threshold excitation conditions leads to random occurrence of an excitation and return to steady state at low noise level and to large, random variations in concentrations at high noise level. At intermediate noise levels (of the order of the threshold excitation), however, we find quasi-periodic concentration oscillations. Thus, critical values of external constraints necessary for oscillations are altered by the presence of noise.

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Year:  1974        PMID: 4530285      PMCID: PMC434329          DOI: 10.1073/pnas.71.10.4067

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

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Authors:  A L HODGKIN; A F HUXLEY
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Review 3.  Oscillatory phenomena in biochemistry.

Authors:  B Hess; A Boiteux
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4.  A chemical instability mechanism for asymmetric cell differentiation.

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5.  An experimental enzyme-membrane oscillator.

Authors:  A Naparstek; D Thomas; S R Caplan
Journal:  Biochim Biophys Acta       Date:  1973-11-16

6.  Chemical oscillations and multiple steady states due to variable boundary permeability.

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7.  Hysteresis and molecular memory record.

Authors:  A Katchalsky; E Neumann
Journal:  Int J Neurosci       Date:  1972-04       Impact factor: 2.292

8.  Biochemical model with multiple steady states and hysteresis.

Authors:  B B Edelstein
Journal:  J Theor Biol       Date:  1970-10       Impact factor: 2.691

9.  Chemical instabilities and relaxation oscillations.

Authors:  B Lavenda; G Nicolis; M Herschkowitz-Kaufman
Journal:  J Theor Biol       Date:  1971-08       Impact factor: 2.691

10.  Reversal of inhibition of enzymes and the model of a spike oscillator.

Authors:  H R Karfunkel; F F Seeling
Journal:  J Theor Biol       Date:  1972-08       Impact factor: 2.691

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  7 in total

1.  Asymmetry and external noise-induced free energy transduction.

Authors:  Y D Chen
Journal:  Proc Natl Acad Sci U S A       Date:  1987-02       Impact factor: 11.205

2.  Bistability in fluctuating environments. Implications in tumor immunology.

Authors:  R Lefever; W Horsthemke
Journal:  Bull Math Biol       Date:  1979       Impact factor: 1.758

3.  Role of substrate inhibition kinetics in enzymatic chemical oscillations.

Authors:  P Shen; R Larter
Journal:  Biophys J       Date:  1994-10       Impact factor: 4.033

4.  Pattern recognition, chaos, and multiplicity in neural networks of excitable systems.

Authors:  A Hjelmfelt; J Ross
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-04       Impact factor: 11.205

5.  Effect of protein synthesis inhibitors on viral mRNA's synthesized early in adenovirus type 2 infection.

Authors:  F Eggerding; H J Raskas
Journal:  J Virol       Date:  1978-01       Impact factor: 5.103

6.  Robust, tunable biological oscillations from interlinked positive and negative feedback loops.

Authors:  Tony Yu-Chen Tsai; Yoon Sup Choi; Wenzhe Ma; Joseph R Pomerening; Chao Tang; James E Ferrell
Journal:  Science       Date:  2008-07-04       Impact factor: 47.728

7.  Multiple steady states and oscillatory behavior of a compartmentalized phosphofructokinase system.

Authors:  J F Hervagault; M C Duban; J P Kernevez; D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  1983-09       Impact factor: 11.205

  7 in total

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