Literature DB >> 4500543

Geometry of the first step in the action of ribonuclease-A (in-line geometry-uridine2',3'-cyclic thiophosphate- 31 P NMR).

D A Usher, E S Erenrich, F Eckstein.   

Abstract

Advantage was taken of the reversibility of the first step of ribonuclease-A action to synthesize the dinucleoside phosphorothioate Up(S)C from the crystalline isomer of uridine 2',3'-cyclic phosphorothioate [Up(S)] and cytidine. Cyclic phosphorothioate was then reformed from Up(S)C by a nonenzymic reaction known to proceed by an in-line mechanism. The geometry of the enzymic reaction was determined to be in-line by a comparison of the Up(S) product with the Up(S) originally used. By the principle of microscopic reversibility, the geometry of the first step in the action of ribonuclease-A is shown to be in-line.

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Year:  1972        PMID: 4500543      PMCID: PMC427556          DOI: 10.1073/pnas.69.1.115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  Uridine 2',3'-O,O-cyclophosphorothioate as substrate for pancreatic ribonuclease (I).

Authors:  F Eckstein
Journal:  FEBS Lett       Date:  1968-12       Impact factor: 4.124

2.  Nucleotide exchange reactions catalysed by ribonuclease and spleen phosphodiesterase. II. Synthesis of polynucleotides.

Authors:  L A HEPPEL; P R WHITFELD; R MARKHAM
Journal:  Biochem J       Date:  1955-05       Impact factor: 3.857

3.  The active site and mechanism of action of bovine pancreatic ribonuclease.

Authors:  D FINDLAY; D G HERRIES; A P MATHIAS; B R RABIN; C A ROSS
Journal:  Nature       Date:  1961-05-27       Impact factor: 49.962

4.  Nucleoside phosphorothioates.

Authors:  F Eckstein
Journal:  J Am Chem Soc       Date:  1970-07-29       Impact factor: 15.419

5.  Synthesis of 3'-5' dinucleotides with RNase T-1.

Authors:  M J Rowe; M A Smith
Journal:  Biochem Biophys Res Commun       Date:  1970-02-06       Impact factor: 3.575

Review 6.  Ribonucleases.

Authors:  E A Barnard
Journal:  Annu Rev Biochem       Date:  1969       Impact factor: 23.643

7.  Facilitated proton transfer in enzyme catalysis. It may have a crucial role in determining the efficiency and specificity of enzymes.

Authors:  J H Wang
Journal:  Science       Date:  1968-07-26       Impact factor: 47.728

8.  Absolute stereochemistry of the second step of ribonuclease action.

Authors:  D A Usher; D I Richardson; F Eckstein
Journal:  Nature       Date:  1970-11-14       Impact factor: 49.962

9.  [On the mechanism of the ribonuclease reaction. 1. The function of the pyrimidine base in the reaction].

Authors:  H G Gassen; H Witzel
Journal:  Eur J Biochem       Date:  1967-03

10.  The mechanism of action of ribonuclease.

Authors:  G C Roberts; E A Dennis; D H Meadows; J S Cohen; O Jardetzky
Journal:  Proc Natl Acad Sci U S A       Date:  1969-04       Impact factor: 11.205

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  16 in total

1.  Configurationally defined phosphorothioate-containing oligoribonucleotides in the study of the mechanism of cleavage of hammerhead ribozymes.

Authors:  G Slim; M J Gait
Journal:  Nucleic Acids Res       Date:  1991-03-25       Impact factor: 16.971

2.  Adenosine 5'-O-([gamma-18O]gamma-thio)triphosphate chiral at the gamma-phosphorus: stereochemical consequences of reactions catalyzed by pyruvate kinase, glycerol kinase, and hexokinase.

Authors:  G A Orr; J Simon; S R Jones; G J Chin; J R Knowles
Journal:  Proc Natl Acad Sci U S A       Date:  1978-05       Impact factor: 11.205

3.  Importance of specific purine amino and hydroxyl groups for efficient cleavage by a hammerhead ribozyme.

Authors:  D J Fu; L W McLaughlin
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

4.  Thiophosphate analogs of c-di-GMP: impact on polymorphism.

Authors:  Jianwei Zhao; Elizabeth Veliath; Seho Kim; Barbara L Gaffney; Roger A Jones
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2009-05       Impact factor: 1.381

5.  Absolute configuration of the diastereomers of adenosine 5'-O-(1-thiotriphosphate): consequences for the stereochemistry of polymerization by DNA-dependent RNA polymerase from Escherichia coli.

Authors:  P M Burgers; F Eckstein
Journal:  Proc Natl Acad Sci U S A       Date:  1978-10       Impact factor: 11.205

6.  Active site of RNase: neutron diffraction study of a complex with uridine vanadate, a transition-state analog.

Authors:  A Wlodawer; M Miller; L Sjölin
Journal:  Proc Natl Acad Sci U S A       Date:  1983-06       Impact factor: 11.205

7.  Tendencies of 31P chemical shifts changes in NMR spectra of nucleotide derivatives.

Authors:  A V Lebedev; A I Rezvukhin
Journal:  Nucleic Acids Res       Date:  1984-07-25       Impact factor: 16.971

Review 8.  Oligomerization of bovine ribonuclease A: structural and functional features of its multimers.

Authors:  Massimo Libonati; Giovanni Gotte
Journal:  Biochem J       Date:  2004-06-01       Impact factor: 3.857

9.  Stereochemistry of polymerization by DNA-dependent RNA-polymerase from Escherichia coli: an investigation with a diastereomeric ATP-analogue.

Authors:  F Eckstein; V W Armstrong; H Sternbach
Journal:  Proc Natl Acad Sci U S A       Date:  1976-09       Impact factor: 11.205

10.  Contribution of a tyrosine side chain to ribonuclease A catalysis and stability.

Authors:  E S Eberhardt; P K Wittmayer; B M Templer; R T Raines
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

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