Literature DB >> 4437206

Low-energy structures of two dipeptides and their relationship to bend conformations.

K Nishikawa, F A Momany, H A Scheraga.   

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Year:  1974        PMID: 4437206     DOI: 10.1021/ma60042a020

Source DB:  PubMed          Journal:  Macromolecules        ISSN: 0024-9297            Impact factor:   5.985


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  23 in total

1.  Construction of a full three-dimensional model of the transpeptidase domain of Streptococcus pneumoniae PBP2x starting from its Calpha-atom coordinates.

Authors:  P A van Hooft; H D Höltje
Journal:  J Comput Aided Mol Des       Date:  2000-11       Impact factor: 3.686

2.  Recent improvements in prediction of protein structure by global optimization of a potential energy function.

Authors:  J Pillardy; C Czaplewski; A Liwo; J Lee; D R Ripoll; R Kaźmierkiewicz; S Oldziej; W J Wedemeyer; K D Gibson; Y A Arnautova; J Saunders; Y J Ye; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

3.  Anomalous diffusion and dynamical correlation between the side chains and the main chain of proteins in their native state.

Authors:  Yoann Cote; Patrick Senet; Patrice Delarue; Gia G Maisuradze; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-11       Impact factor: 11.205

4.  Nonexponential decay of internal rotational correlation functions of native proteins and self-similar structural fluctuations.

Authors:  Yoann Cote; Patrick Senet; Patrice Delarue; Gia G Maisuradze; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

5.  How main-chains of proteins explore the free-energy landscape in native states.

Authors:  Patrick Senet; Gia G Maisuradze; Colette Foulie; Patrice Delarue; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-10       Impact factor: 11.205

6.  Ideal architecture of residue packing and its observation in protein structures.

Authors:  G Raghunathan; R L Jernigan
Journal:  Protein Sci       Date:  1997-10       Impact factor: 6.725

7.  Reconstruction of protein conformations from estimated positions of the C alpha coordinates.

Authors:  P W Payne
Journal:  Protein Sci       Date:  1993-03       Impact factor: 6.725

8.  Determination of side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials of mean force from AM1 energy surfaces of terminally-blocked amino-acid residues, for coarse-grained simulations of protein structure and folding. II. Results, comparison with statistical potentials, and implementation in the UNRES force field.

Authors:  Urszula Kozłowska; Gia G Maisuradze; Adam Liwo; Harold A Scheraga
Journal:  J Comput Chem       Date:  2010-04-30       Impact factor: 3.376

9.  Determination of side-chain-rotamer and side-chain and backbone virtual-bond-stretching potentials of mean force from AM1 energy surfaces of terminally-blocked amino-acid residues, for coarse-grained simulations of protein structure and folding. I. The method.

Authors:  Urszula Kozłowska; Adam Liwo; Harold A Scheraga
Journal:  J Comput Chem       Date:  2010-04-30       Impact factor: 3.376

10.  Calculation of protein backbone geometry from alpha-carbon coordinates based on peptide-group dipole alignment.

Authors:  A Liwo; M R Pincus; R J Wawak; S Rackovsky; H A Scheraga
Journal:  Protein Sci       Date:  1993-10       Impact factor: 6.725

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