Literature DB >> 4372613

Further comparison of predicted and experimentally determined structure of adenylate kinase.

E A Kabat, T T Wu.   

Abstract

An analysis is made of various predictive methods used to locate alpha-helices and beta-sheets in proteins. The analysis is based on attempts to locate the alpha-helices and beta-sheets in adenylate kinase (ATP:AMP phosphotransferase EC 2.7.4.3) from the sequence without prior knowledge of the x-ray findings. Specification of the beta-sheet breaking and alpha-helix breaking tripeptides, a method independent of the others combined with the best of the other methods would substantially reduce the prediction of nonexistent beta-sheets and to a lesser extent would aid in locating alpha-helices.

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Year:  1974        PMID： 4372613      PMCID： PMC434361          DOI： 10.1073/pnas.71.10.4217

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


  14 in total

1.  An attempt to evaluate the influence of neighboring amino acids (n-1) and (n+1) on the backbone conformation of amino acid (n) in proteins. Use in predicting the three-dimensional structure of the polypeptide backbone of other proteins.

Authors:  T T Wu; E A Kabat
Journal:  J Mol Biol       Date:  1973-03-25       Impact factor: 5.469

2.  Construction of a three-dimensional model of the polypeptide backbone of the variable region of kappa immunoglobulin light chains.

Authors:  E A Kabat; T T Wu
Journal:  Proc Natl Acad Sci U S A       Date:  1972-04       Impact factor: 11.205

3.  The influence of nearest-neighbor amino acids on the conformation of the middle amino acid in proteins: comparison of predicted and experimental determination of -sheets in concanavalin A.

Authors:  E A Kabat; T T Wu
Journal:  Proc Natl Acad Sci U S A       Date:  1973-05       Impact factor: 11.205

4.  Influence of prosthetic groups on protein folding and subunit assembly. Recombination of separated human alpha-and beta-globin chains with heme and alloplex interactions of globin chains with heme-containing subunits.

Authors:  M Waks; Y K Yip; S Beychok
Journal:  J Biol Chem       Date:  1973-09-25       Impact factor: 5.157

5.  The influence of nearest-neighboring amino acid residues on aspects of secondary structure of proteins. Attempts to locate -helices and -sheets.

Authors:  E A Kabat; T T Wu
Journal:  Biopolymers       Date:  1973-04       Impact factor: 2.505

6.  Model-building of neurohypophyseal hormones.

Authors:  B Honig; E A Kabat; L Katz; C Levinthal; T T Wu
Journal:  J Mol Biol       Date:  1973-10-25       Impact factor: 5.469

7.  The basic trypsin inhibitor of bovine pancreas. I. Structure analysis and conformation of the polypeptide chain.

Authors:  R Huber; D Kukla; A Rühlmann; O Epp; H Formanek
Journal:  Naturwissenschaften       Date:  1970-08

Review 8.  The structure of papain.

Authors:  J Drenth; J N Jansonius; R Koekoek; B G Wolthers
Journal:  Adv Protein Chem       Date:  1971

9.  The covalent and three-dimensional structure of concanavalin A.

Authors:  G M Edelman; B A Cunningham; G N Reeke; J W Becker; M J Waxdal; J L Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1972-09       Impact factor: 11.205

10.  An attempt to locate the non-helical and permissively helical sequences of proteins: application to the variable regions of immunoglobulin light and heavy chains.

Authors:  T T Wu; E A Kabat
Journal:  Proc Natl Acad Sci U S A       Date:  1971-07       Impact factor: 11.205
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  1 in total

1.  Generation of deviation parameters for amino acid singlets, doublets and triplets from three-dimentional structures of proteins and its implications for secondary structure prediction from amino acid sequences.

Authors:  S A Mugilan; K Veluraja
Journal:  J Biosci       Date:  2000-03       Impact factor: 1.826
  1 in total

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