Literature DB >> 420806

Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs.

H Hayatsu, M Shiragami.   

Abstract

5-Hydroxymethylcytosine reacted with bisulfite and, instead of undergoing usual deamination process, gave cytosine 5-methylenesulfonate as the product. The conversion was rapid and quantitative, and the optimum pH was 4.5. The product was isolated as crystals and characterized. Cytosine 5-methylenesulfonate was only very slowly deaminated by treatment with bisulfite. 5-Hydroxymethyl-2'-deoxycytidine 5'-phosphate reacted with bisulfite in the same way as 5-hydroxymethylcytosine. Residues of 5-hydroxymethylcytosine in native as well as denatured T2 DNA were convertible to those of cytosine 5-methylenesulfonate by treatment of the DNA with bisulfite. While it is known that the 5-hydroxy-methyl groups of T-even bacteriophage DNA can be enzymatically glucosylated, this observation offers chemical evidence that the 5-hydrozymethyl groups in DNA are situated in such a way that they can readily react with external agents. 5-Hydroxymethyluracil gave uracil 5-methylenesulfonate on treatment with bisulfite. This reaction was much slower than that of 5-hydroxymethylcytosine, and the optimum pH was between 6 and 7.

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Year:  1979        PMID: 420806     DOI: 10.1021/bi00571a013

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  30 in total

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6.  The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.

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7.  Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine.

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8.  Direct detection of DNA methylation during single-molecule, real-time sequencing.

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9.  Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA.

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10.  Comparison of bisulfite modification of 5-methyldeoxycytidine and deoxycytidine residues.

Authors:  R Y Wang; C W Gehrke; M Ehrlich
Journal:  Nucleic Acids Res       Date:  1980-10-24       Impact factor: 16.971

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