Literature DB >> 4000947

Removal of repeated sequences from hybridisation probes.

P G Sealey, P A Whittaker, E M Southern.   

Abstract

Pre-reassociation of human clone probes, containing dispersed highly repeated sequences, (e.g. Alu and KpnI families), with a large excess of sonicated total human DNA allows signal from single and low copy number components to be detected in transfer hybridisations. The signal from non-dispersed repeated sequences is reduced to single copy levels. The procedure, which is simple and quick, is illustrated using model combinations of well characterised cloned probes, and is applied to a sample of randomly chosen cosmid clones. A theoretical assessment is presented which may be useful to those wishing to use this procedure.

Entities:  

Mesh:

Year:  1985        PMID: 4000947      PMCID: PMC341124          DOI: 10.1093/nar/13.6.1905

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  18 in total

1.  Sequence organization of the human genome.

Authors:  C W Schmid; P L Deininger
Journal:  Cell       Date:  1975-11       Impact factor: 41.582

2.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors:  H C Birnboim; J Doly
Journal:  Nucleic Acids Res       Date:  1979-11-24       Impact factor: 16.971

3.  Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms.

Authors:  R J Britten; D E Kohne
Journal:  Science       Date:  1968-08-09       Impact factor: 47.728

4.  Molecular cloning and characterization of the human beta-like globin gene cluster.

Authors:  E F Fritsch; R M Lawn; T Maniatis
Journal:  Cell       Date:  1980-04       Impact factor: 41.582

5.  Organization and evolution of the class I gene family in the major histocompatibility complex of the C57BL/10 mouse.

Authors:  E H Weiss; L Golden; K Fahrner; A L Mellor; J J Devlin; H Bullman; H Tiddens; H Bud; R A Flavell
Journal:  Nature       Date:  1984 Aug 23-29       Impact factor: 49.962

6.  The duplicated human alpha globin genes lie close together in cellular DNA.

Authors:  S H Orkin
Journal:  Proc Natl Acad Sci U S A       Date:  1978-12       Impact factor: 11.205

7.  Renaturation rate studies of a single family of interspersed repeated sequences in human deoxyribonucleic acid.

Authors:  F P Rinehart; T G Ritch; P L Deininger; C W Schmid
Journal:  Biochemistry       Date:  1981-05-26       Impact factor: 3.162

8.  The isolation of structural genes from libraries of eucaryotic DNA.

Authors:  T Maniatis; R C Hardison; E Lacy; J Lauer; C O'Connell; D Quon; G K Sim; A Efstratiadis
Journal:  Cell       Date:  1978-10       Impact factor: 41.582

9.  Ubiquitous, interspersed repeated sequences in mammalian genomes.

Authors:  W R Jelinek; T P Toomey; L Leinwand; C H Duncan; P A Biro; P V Choudary; S M Weissman; C M Rubin; C M Houck; P L Deininger; C W Schmid
Journal:  Proc Natl Acad Sci U S A       Date:  1980-03       Impact factor: 11.205

10.  The chromosomal arrangement of human alpha-like globin genes: sequence homology and alpha-globin gene deletions.

Authors:  J Lauer; C K Shen; T Maniatis
Journal:  Cell       Date:  1980-05       Impact factor: 41.582

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  96 in total

1.  Sequence-based design of single-copy genomic DNA probes for fluorescence in situ hybridization.

Authors:  P K Rogan; P M Cazcarro; J H Knoll
Journal:  Genome Res       Date:  2001-06       Impact factor: 9.043

2.  Identification of sample-specific sequences in mammalian cDNA and genomic DNA by the novel ligation-mediated subtraction (Limes).

Authors:  T E Hansen-Hagge; U Trefzer; A S zu Reventlow; K Kaltoft; W Sterry
Journal:  Nucleic Acids Res       Date:  2001-02-15       Impact factor: 16.971

3.  Hybridization fingerprinting of high-density cDNA-library arrays with cDNA pools derived from whole tissues.

Authors:  T M Gress; J D Hoheisel; G G Lennon; G Zehetner; H Lehrach
Journal:  Mamm Genome       Date:  1992       Impact factor: 2.957

4.  Construction of a human chromosome 3 specific NotI linking library using a novel cloning procedure.

Authors:  E R Zabarovsky; F Boldog; T Thompson; D Scanlon; G Winberg; Z Marcsek; R Erlandsson; E J Stanbridge; G Klein; J Sümegi
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

5.  Isolation of a yeast artificial chromosome spanning the 8;21 translocation breakpoint t(8;21)(q22;q22.3) in acute myelogenous leukemia.

Authors:  J Gao; P Erickson; K Gardiner; M M Le Beau; M O Diaz; D Patterson; J D Rowley; H A Drabkin
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-01       Impact factor: 11.205

6.  The GLI gene encodes a nuclear protein which binds specific sequences in the human genome.

Authors:  K W Kinzler; B Vogelstein
Journal:  Mol Cell Biol       Date:  1990-02       Impact factor: 4.272

7.  Human cytochrome P-450 PB-1: a multigene family involved in mephenytoin and steroid oxidations that maps to chromosome 10.

Authors:  R R Meehan; J R Gosden; D Rout; N D Hastie; T Friedberg; M Adesnik; R Buckland; V van Heyningen; J Fletcher; N K Spurr
Journal:  Am J Hum Genet       Date:  1988-01       Impact factor: 11.025

8.  Molecular analysis of human chromosome 16 cosmid clones containing NotI sites.

Authors:  T Lerner; G Wright; B Leverone; W Dackowski; D Shook; M A Anderson; K Klinger; D Callen; G Landes
Journal:  Mamm Genome       Date:  1992       Impact factor: 2.957

9.  Novel detection of restriction fragment length polymorphisms in the human major histocompatibility complex.

Authors:  S J Cross; S Tonks; J Trowsdale; R D Campbell
Journal:  Immunogenetics       Date:  1991       Impact factor: 2.846

10.  Recombinant human cachectin/tumor necrosis factor but not interleukin-1 alpha downregulates lipoprotein lipase gene expression at the transcriptional level in mouse 3T3-L1 adipocytes.

Authors:  R Zechner; T C Newman; B Sherry; A Cerami; J L Breslow
Journal:  Mol Cell Biol       Date:  1988-06       Impact factor: 4.272

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