Literature DB >> 3916934

The dependence of the surface electrostatic potential of B-DNA on environmental factors.

R Lavery1, B Pullman.   

Abstract

The electrostatic potential of B-DNA is calculated on its surface envelope for two homopolymeric base pair sequences using models representing the effects of both counterion binding and of aqueous solution. The influence of these two factors on the resulting potentials is established and the significance of calculations which omit such effects is discussed.

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Year:  1985        PMID： 3916934     DOI： 10.1080/07391102.1985.10507618

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN： 0739-1102


  11 in total

1.  Sequence-specific binding of counterions to B-DNA.

Authors:  V P Denisov; B Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

2.  Effect of a neutralized phosphate backbone on the minor groove of B-DNA: molecular dynamics simulation studies.

Authors:  Donald Hamelberg; Loren Dean Williams; W David Wilson
Journal:  Nucleic Acids Res       Date:  2002-08-15       Impact factor: 16.971

3.  Ternary interactions of spermine with DNA: 4'-epiadriamycin and other DNA: anthracycline complexes.

Authors:  L D Williams; C A Frederick; G Ughetto; A Rich
Journal:  Nucleic Acids Res       Date:  1990-09-25       Impact factor: 16.971

4.  Molecular modelling study of changes induced by netropsin binding to nucleosome core particles.

Authors:  J J Pérez; J Portugal
Journal:  Nucleic Acids Res       Date:  1990-07-11       Impact factor: 16.971

5.  A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.

Authors:  M A Young; G Ravishanker; D L Beveridge
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

6.  Cationic porphyrins as probes of DNA structure.

Authors:  S D Bromley; B W Ward; J C Dabrowiak
Journal:  Nucleic Acids Res       Date:  1986-11-25       Impact factor: 16.971

7.  Gas-phase stability of double-stranded oligodeoxynucleotides and their noncovalent complexes with DNA-binding drugs as revealed by collisional activation in an ion trap.

Authors:  K X Wan; M L Gross; T Shibue
Journal:  J Am Soc Mass Spectrom       Date:  2000-05       Impact factor: 3.109

8.  Drug-induced DNA repair: X-ray structure of a DNA-ditercalinium complex.

Authors:  Q Gao; L D Williams; M Egli; D Rabinovich; S L Chen; G J Quigley; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

9.  Heterodimeric DNA-binding dyes designed for energy transfer: stability and applications of the DNA complexes.

Authors:  S C Benson; R A Mathies; A N Glazer
Journal:  Nucleic Acids Res       Date:  1993-12-11       Impact factor: 16.971

10.  Monovalent cation binding in the minor groove of DNA A-tracts.

Authors:  Qian Dong; Earle Stellwagen; Nancy C Stellwagen
Journal:  Biochemistry       Date:  2009-02-10       Impact factor: 3.162
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