Literature DB >> 3916932

Torsional and bending rigidity of the double helix from data on small DNA rings.

M D Frank-Kamenetskii1, A V Lukashin, V V Anshelevich, A V Vologodskii.   

Abstract

We have calculated the variance of equilibrium distribution of a circular wormlike polymer chain over the writhing number, [Wr)2), as a function of the number of Kuhn statistical segments, n. For large n these data splice well with our earlier results obtained for a circular freely jointed polymer chain. Assuming that [delta Lk)2) = [delta Tw)2) we have compared our results with experimental data on the chain length dependence of the [delta Lk)2) value recently obtained by Horowitz and Wang for small DNA rings. This comparison has shown an excellent agreement between theory and experiment and yielded a reliable estimate of the torsional and bending rigidity parameters. Namely, the torsional rigidity constant is C = 3.0.10(-19) erg cm, and the bending rigidity as expressed in terms of the DNA persistence length is a = 500 A. The obtained value of C agrees well with earlier estimates by Shore and Baldwin as well as by Horowitz and Wang whereas the a value is in accord with the data of Hagerman. We have found the data of Shore and Baldwin on the chain length dependence of the [delta Lk)2) value to be entirely inconsistent with our theorectical results.

Entities:  

Mesh:

Substances:

Year:  1985        PMID: 3916932     DOI: 10.1080/07391102.1985.10507616

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  37 in total

1.  Dynamics of site juxtaposition in supercoiled DNA.

Authors:  J Huang; T Schlick; A Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Dynamic bending rigidity of a 200-bp DNA in 4 mM ionic strength: a transient polarization grating study.

Authors:  A N Naimushin; B S Fujimoto; J M Schurr
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

3.  Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids.

Authors:  Javier Arsuaga; Mariel Vázquez; Sonia Trigueros; De Witt Sumners; Joaquim Roca
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

4.  Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting.

Authors:  A A Podtelezhnikov; N R Cozzarelli; A V Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-09       Impact factor: 11.205

5.  Unlinking of supercoiled DNA catenanes by type IIA topoisomerases.

Authors:  Alexander Vologodskii
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

6.  Roles of DNA looping in enhancer-blocking activity.

Authors:  Naoko Tokuda; Masaki Sasai; George Chikenji
Journal:  Biophys J       Date:  2011-01-05       Impact factor: 4.033

7.  Gapped DNA and cyclization of short DNA fragments.

Authors:  Quan Du; Maria Vologodskaia; Heiko Kuhn; Maxim Frank-Kamenetskii; Alexander Vologodskii
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

8.  Braiding DNA: experiments, simulations, and models.

Authors:  G Charvin; A Vologodskii; D Bensimon; V Croquette
Journal:  Biophys J       Date:  2005-03-18       Impact factor: 4.033

9.  Cyclization of short DNA fragments and bending fluctuations of the double helix.

Authors:  Quan Du; Chaim Smith; Nahum Shiffeldrim; Maria Vologodskaia; Alexander Vologodskii
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-04       Impact factor: 11.205

10.  Bridging chromatin structure and function over a range of experimental spatial and temporal scales by molecular modeling.

Authors:  Stephanie Portillo-Ledesma; Tamar Schlick
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2019-08-06
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.