Literature DB >> 3891409

Regularities in formation of the spine of hydration in the DNA minor groove and its influence on the DNA structure.

V P Chuprina.   

Abstract

Computer calculations as well as an analysis of space-filling models and literature data allowed the following conclusions to be made: an ordered spine of water in the DNA minor groove, similar to that revealed in the CGCGAATTCGCG crystal, seems to exist in DNA crystals, fibers and solutions; it is shown that this spine may be formed on A/T runs containing no TA step while on the TA step the spine is disrupted; the existence of this spine changes the double helix structure stabilizing a definite DNA conformation; the spine of hydration makes the DNA more stable to conformational transitions. These conclusions permit us to interpret a large body of experimental data on DNA crystals, fibers and solutions. The role of water bridges constituting the first hydration shell of the ordered spine of water is discussed in connection with the B-to-A transition.

Entities:  

Mesh:

Substances:

Year:  1985        PMID: 3891409     DOI: 10.1016/0014-5793(85)81347-8

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  10 in total

1.  7-Deaza-2'-deoxyadenosine and 3-deaza-2'-deoxyadenosine replacing dA within d(A6)-tracts: differential bending at 3'- and 5'-junctions of d(A6).d(T6) and B-DNA.

Authors:  F Seela; T Grein
Journal:  Nucleic Acids Res       Date:  1992-07-11       Impact factor: 16.971

2.  The role of a minor groove spine of hydration in stabilizing poly(dA).poly(dT) against fluctuational interbase H-bond disruption in the premelting temperature regime.

Authors:  Y Z Chen; E W Prohofsky
Journal:  Nucleic Acids Res       Date:  1992-02-11       Impact factor: 16.971

3.  Sequence effects on local DNA topology.

Authors:  V P Chuprina; A A Lipanov; S G Kim; A Kintanar; B R Reid
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

4.  Acoustical investigation of poly(dA).poly(dT), poly[d(A-T)], poly(A).poly(U) and DNA hydration in dilute aqueous solutions.

Authors:  V A Buckin; B I Kankiya; A P Sarvazyan; H Uedaira
Journal:  Nucleic Acids Res       Date:  1989-06-12       Impact factor: 16.971

5.  The structure of poly(dA):poly(dT) in a condensed state and in solution.

Authors:  A A Lipanov; V P Chuprina
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

6.  Intrinsic conformational properties of deoxyribonucleosides: implicated role for cytosine in the equilibrium among the A, B, and Z forms of DNA.

Authors:  N Foloppe; A D MacKerell
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

7.  Temperature dependence of the volumetric parameters of drug binding to poly[d(A-T)].Poly[d(A-T)] and Poly(dA).Poly(dT).

Authors:  Xuesong Shi; Robert B Macgregor
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

8.  Molecular dynamics simulation of the hydration shell of a B-DNA decamer reveals two main types of minor-groove hydration depending on groove width.

Authors:  V P Chuprina; U Heinemann; A A Nurislamov; P Zielenkiewicz; R E Dickerson; W Saenger
Journal:  Proc Natl Acad Sci U S A       Date:  1991-01-15       Impact factor: 11.205

9.  Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove.

Authors:  V P Chuprina
Journal:  Nucleic Acids Res       Date:  1987-01-12       Impact factor: 16.971

10.  DNA curvature at A tracts containing a non-polar thymine mimic.

Authors:  Angèle Maki; Floyd E Brownewell; Dongyu Liu; Eric T Kool
Journal:  Nucleic Acids Res       Date:  2003-02-01       Impact factor: 16.971

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.