Literature DB >> 3785407

DNA conformation is determined by economics in the hydration of phosphate groups.

W Saenger, W N Hunter, O Kennard.   

Abstract

Mixed sequence DNA can exist in two right-handed and one left-handed double helical conformations--A, B and Z. Under conditions of high water activity the B conformation prevails. If the water activity is reduced on addition of salt or organic solvents, transformation occurs to A-DNA or, in DNAs with alternating purine-pyrimidine sequences, to the left-handed Z-DNA. In crystal structure analyses of oligonucleotides, the free oxygen atoms of adjacent phosphate groups along the polynucleotide chain in B-DNA are found at least 6.6 A apart and individually hydrated whereas they are as close as 5.3 A in A-DNA and 4.4 A in Z-DNA, and bridged by water molecules. We suggest that this more economical hydration in A- and Z-DNA compared with B-DNA is the underlying cause of B----A and B----Z transitions.

Entities:  

Mesh:

Substances:

Year:  1986        PMID: 3785407     DOI: 10.1038/324385a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  58 in total

1.  The influence of packing on free radical yields in solid-state DNA: film compared to lyophilized frozen solution.

Authors:  M T Milano; W A Bernhard
Journal:  Radiat Res       Date:  1999-08       Impact factor: 2.841

2.  Intermolecular interactions and water structure in a condensed phase B-DNA crystal.

Authors:  G R Clark; C J Squire; L J Baker; R F Martin; J White
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

3.  The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited.

Authors:  H Shi; P B Moore
Journal:  RNA       Date:  2000-08       Impact factor: 4.942

4.  Triplex hydration: nanosecond molecular dynamics simulation of the solvated triplex formed by mixed sequences.

Authors:  Rajendra P Ojha; Rakesh K Tiwari
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

5.  Observation of a distinct transition in the mode of interconversion of ring pucker conformers in non-crystalline d-ribose-2'-d from 2H NMR spin-alignment.

Authors:  Andy C LiWang; David E McCready; Gary P Drobny; Brian R Reid; Michael A Kennedy
Journal:  J Biomol NMR       Date:  2003-07       Impact factor: 2.835

6.  Mediation of the A/B-DNA helix transition by G-tracts in the crystal structure of duplex CATGGGCCCATG.

Authors:  Ho-Leung Ng; Richard E Dickerson
Journal:  Nucleic Acids Res       Date:  2002-09-15       Impact factor: 16.971

7.  Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations.

Authors:  Surjit B Dixit; Mihaly Mezei; David L Beveridge
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

8.  Changes of hydration during conformational transitions of DNA.

Authors:  M Harmouchi; G Albiser; S Premilat
Journal:  Eur Biophys J       Date:  1990       Impact factor: 1.733

9.  The B- to A-DNA transition and the reorganization of solvent at the DNA surface.

Authors:  Nina Pastor
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

10.  The 1.19 A X-ray structure of 2'-O-Me(CGCGCG)(2) duplex shows dehydrated RNA with 2-methyl-2,4-pentanediol in the minor groove.

Authors:  D A Adamiak; W R Rypniewski; J Milecki; R W Adamiak
Journal:  Nucleic Acids Res       Date:  2001-10-15       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.