Literature DB >> 3780675

3'-End formation of transcripts from the yeast rRNA operon.

A E Kempers-Veenstra, J Oliemans, H Offenberg, A F Dekker, P W Piper, R J Planta, J Klootwijk.   

Abstract

Deletion analysis of artificial rRNA minigenes transformed into Saccharomyces cerevisiae revealed that a 110 bp long fragment corresponding to positions -36 to +74 relative to the 3'-end of the 26S rRNA gene, is both necessary and sufficient for obtaining transcripts whose 3'-termini are identical to those of 26S and 37S (pre-)rRNA. These termini are produced via processing of longer transcripts because in an rna 82.1 mutant the majority of the minigene transcripts extend further downstream. Since the rna 82.1 mutation inactivates an endonuclease involved in the 3'-processing of 5S pre-rRNA it is concluded that the maturation of 37S- and that of 5S pre-rRNA requires a common factor. Comparison of the spacer sequences between Saccharomyces carlsbergensis, Saccharomyces rosei and Hansenula wingei revealed several conserved sequence blocks within the region between +10 and +55. These conserved sequence tracts, which are part of a longer region showing dyad symmetry, are supposed to be involved in the interaction with the processing component(s). Deletion of the sequences required for the formation of the 3'-ends of 26S rRNA and 37S pre-rRNA revealed a putative terminator for transcription by RNA polymerase I situated at position +210. This site maps within a DNA fragment that also contains the enhancing element for rDNA transcription by RNA polymerase I.

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Year:  1986        PMID: 3780675      PMCID: PMC1167172          DOI: 10.1002/j.1460-2075.1986.tb04554.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  26 in total

1.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

2.  Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes.

Authors:  J C Alwine; D J Kemp; G R Stark
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

3.  Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose.

Authors:  P S Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  1980-09       Impact factor: 11.205

4.  The transcription termination site of the ribosomal RNA operon in yeast.

Authors:  G M Veldman; J Klootwijk; P de Jonge; R J Leer; R J Planta
Journal:  Nucleic Acids Res       Date:  1980-11-25       Impact factor: 16.971

5.  The nucleotide sequence at the transcription termination site of the ribosomal RNA gene in Tetrahymena thermophila.

Authors:  N Din; J Engberg; J G Gall
Journal:  Nucleic Acids Res       Date:  1982-03-11       Impact factor: 16.971

6.  Cloning and determination of the transcription termination site of ribosomal RNA gene of the mouse.

Authors:  R Kominami; Y Mishima; Y Urano; M Sakai; M Muramatsu
Journal:  Nucleic Acids Res       Date:  1982-03-25       Impact factor: 16.971

7.  The nucleotide sequence of the initiation and termination sites for ribosomal RNA transcription in X. laevis.

Authors:  B Sollner-Webb; R H Reeder
Journal:  Cell       Date:  1979-10       Impact factor: 41.582

8.  Coordinate control of syntheses of ribosomal ribonucleic acid and ribosomal proteins during nutritional shift-up in Saccharomyces cerevisiae.

Authors:  D R Kief; J R Warner
Journal:  Mol Cell Biol       Date:  1981-11       Impact factor: 4.272

9.  The nucleotide sequence at the transcription termination site of ribosomal RNA in Drosophila melanogaster.

Authors:  R K Mandal; I B Dawid
Journal:  Nucleic Acids Res       Date:  1981-04-24       Impact factor: 16.971

10.  Altered maturation of sequences at the 3' terminus of 5S gene transcripts in a Saccharomyces cerevisiae mutant that lacks a RNA processing endonuclease.

Authors:  P W Piper; J A Bellatin; A Lockheart
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

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  55 in total

Review 1.  Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  D Kressler; P Linder; J de La Cruz
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

2.  The transcript release factor PTRF augments ribosomal gene transcription by facilitating reinitiation of RNA polymerase I.

Authors:  P Jansa; C Burek; E E Sander; I Grummt
Journal:  Nucleic Acids Res       Date:  2001-01-15       Impact factor: 16.971

Review 3.  A decade of 3C technologies: insights into nuclear organization.

Authors:  Elzo de Wit; Wouter de Laat
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

4.  Termination of transcription by yeast RNA polymerase I.

Authors:  C A van der Sande; T Kulkens; A B Kramer; I J de Wijs; H van Heerikhuizen; J Klootwijk; R J Planta
Journal:  Nucleic Acids Res       Date:  1989-11-25       Impact factor: 16.971

5.  Sequences within the spacer region of yeast rRNA cistrons that stimulate 35S rRNA synthesis in vivo mediate RNA polymerase I-dependent promoter and terminator activities.

Authors:  R Mestel; M Yip; J P Holland; E Wang; J Kang; M J Holland
Journal:  Mol Cell Biol       Date:  1989-03       Impact factor: 4.272

Review 6.  Structural perspective on mutations affecting the function of multisubunit RNA polymerases.

Authors:  Vincent Trinh; Marie-France Langelier; Jacques Archambault; Benoit Coulombe
Journal:  Microbiol Mol Biol Rev       Date:  2006-03       Impact factor: 11.056

7.  Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes.

Authors:  Attila Németh; Sylvain Guibert; Vijay Kumar Tiwari; Rolf Ohlsson; Gernot Längst
Journal:  EMBO J       Date:  2008-03-20       Impact factor: 11.598

8.  The yeast rRNA gene enhancer does not function by recycling RNA polymerase I and cannot act as a UAS.

Authors:  M Butlin; R Quincey
Journal:  Curr Genet       Date:  1991-07       Impact factor: 3.886

9.  Termination region in rRNA genes from a eucaryotic thermophile, Thermomyces lanuginosus.

Authors:  K Walker; W M Wong; R N Nazar
Journal:  Mol Cell Biol       Date:  1990-01       Impact factor: 4.272

Review 10.  Synthesis of ribosomes in Saccharomyces cerevisiae.

Authors:  J R Warner
Journal:  Microbiol Rev       Date:  1989-06
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