Literature DB >> 3767992

A part of codon bias in genes protects protein spatial structures from destabilization by random single point mutations.

J Kypr.   

Abstract

Relationships are examined, using a primitive approximation, between the known general codon bias in genes and resistance of protein tertiary structure to destabilization by random single point mutations. A correlation of these two properties is found in the case of the first codon position while the second and third codon positions are evidently used for other purposes. This study suggests a separation of roles of the particular codon positions in the translation of the genetic message.

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Year:  1986        PMID: 3767992     DOI: 10.1016/s0006-291x(86)80289-3

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  6 in total

1.  Overlapping messages and survivability.

Authors:  Ofer Peleg; Valery Kirzhner; Edward Trifonov; Alexander Bolshoy
Journal:  J Mol Evol       Date:  2004-10       Impact factor: 2.395

2.  The effects of the codon usage and translation speed on protein folding of 3D(pol) of foot-and-mouth disease virus.

Authors:  Xiao-Xia Ma; Yu-Ping Feng; Jun-Lin Liu; Bing Ma; Li Chen; Yong-Qing Zhao; Peng-Hui Guo; Jun-Zhen Guo; Zhong-Ren Ma; Jie Zhang
Journal:  Vet Res Commun       Date:  2013-05-29       Impact factor: 2.459

3.  Protein secondary structural types are differentially coded on messenger RNA.

Authors:  T A Thanaraj; P Argos
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

4.  Biased distribution of adenine and thymine in gene nucleotide sequences.

Authors:  J Mrázek; J Kypr
Journal:  J Mol Evol       Date:  1994-11       Impact factor: 2.395

5.  The characteristics of rare codon clusters in the genome and proteins of hepatitis C virus; a bioinformatics look.

Authors:  Mohammadreza Fattahi; Abdorrasoul Malekpour; Mojtaba Mortazavi; Alireza Safarpour; Nasrin Naseri
Journal:  Middle East J Dig Dis       Date:  2014-10

6.  Bioinformatic Identification of Rare Codon Clusters (RCCs) in HBV Genome and Evaluation of RCCs in Proteins Structure of Hepatitis B Virus.

Authors:  Mojtaba Mortazavi; Mohammad Zarenezhad; Saeid Gholamzadeh; Seyed Moayed Alavian; Mohammad Ghorbani; Reza Dehghani; Abdorrasoul Malekpour; Mohammadhasan Meshkibaf; Ali Fakhrzad
Journal:  Hepat Mon       Date:  2016-10-04       Impact factor: 0.660

  6 in total

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