Literature DB >> 3748804

The DNase I sensitive domain of the chicken lysozyme gene spans 24 kb.

K Jantzen, H P Fritton, T Igo-Kemenes.   

Abstract

We have determined the DNase I sensitive chromatin domain of the lysozyme gene in the hen oviduct. When nuclei were digested with DNase I, about 14 kb of upstream and 6 kb of downstream sequences in addition to the 4 kb long transcribed region were preferentially degraded. The transcription start site is located near the center of the approximately 24 kb long sensitive domain. At the 3' boundary there is a rather abrupt transition from the DNase I sensitive to the resistant chromatin configuration whereas at the 5' border this transition occurs in a gradual fashion over 6-7 kb of DNA. No obvious correlation between the boundaries of the domain and repetitive sequences could be established. DNase I-hypersensitive sites are clustered within the boundaries of the sensitive domain which seems to represent a functional unit of the gene.

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Year:  1986        PMID: 3748804      PMCID: PMC311623          DOI: 10.1093/nar/14.15.6085

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  31 in total

1.  Absence of the sequence G-T-psi-C-G(A)- in several eukaryotic cytoplasmic initiator transfer RNAs.

Authors:  M Simsek; J Ziegenmeyer; J Heckman; U L Rajbhandary
Journal:  Proc Natl Acad Sci U S A       Date:  1973-04       Impact factor: 11.205

Review 2.  Structure of transcribing chromatin.

Authors:  D Mathis; P Oudet; P Chambon
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1980

3.  The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.

Authors:  C Wu
Journal:  Nature       Date:  1980-08-28       Impact factor: 49.962

4.  Interaction of HMG 14 and 17 with actively transcribed genes.

Authors:  S Weisbrod; M Groudine; H Weintraub
Journal:  Cell       Date:  1980-01       Impact factor: 41.582

5.  Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I.

Authors:  J Stalder; A Larsen; J D Engel; M Dolan; M Groudine; H Weintraub
Journal:  Cell       Date:  1980-06       Impact factor: 41.582

6.  Differential nuclease sensitivity of the ovalbumin and beta-globin chromatin regions in erythrocytes and oviduct cells of laying hen.

Authors:  M Bellard; M T Kuo; G Dretzen; P Chambon
Journal:  Nucleic Acids Res       Date:  1980-06-25       Impact factor: 16.971

7.  Nucleotide sequence and secondary structure of potato spindle tuber viroid.

Authors:  H J Gross; H Domdey; C Lossow; P Jank; M Raba; H Alberty; H L Sänger
Journal:  Nature       Date:  1978-05-18       Impact factor: 49.962

8.  Isolation of the chicken beta-globin gene and a linked embryonic beta-like globin gene from a chicken DNA recombinant library.

Authors:  J B Dodgson; J Strommer; J D Engel
Journal:  Cell       Date:  1979-08       Impact factor: 41.582

9.  Rearranged and germline immunoglobulin kappa genes: different states of DNase I sensitivity of constant kappa genes in immunocompetent and nonimmune cells.

Authors:  U Storb; R Wilson; E Selsing; A Walfield
Journal:  Biochemistry       Date:  1981-02-17       Impact factor: 3.162

10.  The lysozyme enhancer: cell-specific activation of the chicken lysozyme gene by a far-upstream DNA element.

Authors:  M Theisen; A Stief; A E Sippel
Journal:  EMBO J       Date:  1986-04       Impact factor: 11.598

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  30 in total

1.  Structural and functional conservation at the boundaries of the chicken beta-globin domain.

Authors:  N Saitoh; A C Bell; F Recillas-Targa; A G West; M Simpson; M Pikaart; G Felsenfeld
Journal:  EMBO J       Date:  2000-05-15       Impact factor: 11.598

2.  The chicken lysozyme chromatin domain contains a second, widely expressed gene.

Authors:  Suyinn Chong; Arthur D Riggs; Constanze Bonifer
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

3.  Developmentally regulated recruitment of transcription factors and chromatin modification activities to chicken lysozyme cis-regulatory elements in vivo.

Authors:  Pascal Lefevre; Svitlana Melnik; Nicola Wilson; Arthur D Riggs; Constanze Bonifer
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

4.  Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites.

Authors:  Gregory E Crawford; Ingeborg E Holt; James C Mullikin; Denise Tai; Robert Blakesley; Gerard Bouffard; Alice Young; Catherine Masiello; Eric D Green; Tyra G Wolfsberg; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

5.  A complex chromatin landscape revealed by patterns of nuclease sensitivity and histone modification within the mouse beta-globin locus.

Authors:  Michael Bulger; Dirk Schübeler; M A Bender; Joan Hamilton; Catherine M Farrell; Ross C Hardison; Mark Groudine
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

6.  The polyomavirus enhancer activates chromatin accessibility on integration into the HPRT gene.

Authors:  M Pikaart; J Feng; B Villeponteau
Journal:  Mol Cell Biol       Date:  1992-12       Impact factor: 4.272

7.  The -6.1-kilobase chicken lysozyme enhancer is a multifactorial complex containing several cell-type-specific elements.

Authors:  T Grewal; M Theisen; U Borgmeyer; T Grussenmeyer; R A Rupp; A Stief; F Qian; A Hecht; A E Sippel
Journal:  Mol Cell Biol       Date:  1992-05       Impact factor: 4.272

8.  DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.

Authors:  Gregory E Crawford; Sean Davis; Peter C Scacheri; Gabriel Renaud; Mohamad J Halawi; Michael R Erdos; Roland Green; Paul S Meltzer; Tyra G Wolfsberg; Francis S Collins
Journal:  Nat Methods       Date:  2006-07       Impact factor: 28.547

9.  Gamma rays and bleomycin nick DNA and reverse the DNase I sensitivity of beta-globin gene chromatin in vivo.

Authors:  B Villeponteau; H G Martinson
Journal:  Mol Cell Biol       Date:  1987-05       Impact factor: 4.272

10.  Active beta-globin gene transcription occurs in methylated, DNase I-resistant chromatin of nonerythroid chicken cells.

Authors:  R Lois; L Freeman; B Villeponteau; H G Martinson
Journal:  Mol Cell Biol       Date:  1990-01       Impact factor: 4.272

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