Literature DB >> 3735433

Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5 BrC-G) in crystals grown at two temperatures.

B Chevrier, A C Dock, B Hartmann, M Leng, D Moras, M T Thuong, E Westhof.   

Abstract

Crystals of the hexadeoxyoligomer d(5BrC-G-5BrC-G-5BrC-G) were grown at different temperatures (5 degrees C, 18 degrees C and 37 degrees C) in the absence of divalent cations. The crystals grown at 5 degrees C did not diffract X-rays, while those grown at 18 degrees C and 37 degrees C did. The oligomer adopts the left-handed ZI conformation in both crystals. The main difference resides in a more extensive hydration shell in the crystal grown at high temperature than in the crystal grown at low temperature. The high-temperature crystal displays a spine of hydration running deep in the minor groove and linking exocyclic O-2 atoms of the pyrimidine rings. In both crystalline forms, a hydrated sodium ion bound to the N-7 of a guanine ring was found. Strings of water molecules bridging phosphate anionic oxygen atoms are found along the backbone. The absolute values of the propeller-twist are also different in both structures although the values of the twist are very similar. The results point to the importance of the crystallization conditions when analysing fine structural details like solvation properties of oligomers.

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Year:  1986        PMID: 3735433     DOI: 10.1016/s0022-2836(86)80016-x

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  14 in total

1.  Evidence for a new Z-type left-handed DNA helix: properties of Z(WC)-DNA.

Authors:  A T Ansevin; A H Wang
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

2.  Hydration of the phosphate group in double-helical DNA.

Authors:  B Schneider; K Patel; H M Berman
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

3.  Solvent interactions stabilising nucleic acid conformers.

Authors:  R J Elliott; J M Goodfellow
Journal:  Nucleic Acids Res       Date:  1989-01-11       Impact factor: 16.971

4.  Acoustical investigation of poly(dA).poly(dT), poly[d(A-T)], poly(A).poly(U) and DNA hydration in dilute aqueous solutions.

Authors:  V A Buckin; B I Kankiya; A P Sarvazyan; H Uedaira
Journal:  Nucleic Acids Res       Date:  1989-06-12       Impact factor: 16.971

5.  Crystal structure of the self-complementary 5'-purine start decamer d(GCGCGCGCGC) in the Z-DNA conformation. I.

Authors:  C Ban; B Ramakrishnan; M Sundaralingam
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

6.  Stereoelectronic effects of deoxyribose O4' on DNA conformation.

Authors:  M Egli; R V Gessner
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-03       Impact factor: 11.205

7.  A systematic method for studying the spatial distribution of water molecules around nucleic acid bases.

Authors:  B Schneider; D M Cohen; L Schleifer; A R Srinivasan; W K Olson; H M Berman
Journal:  Biophys J       Date:  1993-12       Impact factor: 4.033

Review 8.  Crystallographic studies of chemically modified nucleic acids: a backward glance.

Authors:  Martin Egli; Pradeep S Pallan
Journal:  Chem Biodivers       Date:  2010-01       Impact factor: 2.408

9.  Comparison of the reactivity of B-DNA and Z-DNA with two isosteric chemical carcinogens: 2-N,N-acetoxyacetylaminofluorene and 3-N,N-acetoxyacetylamino-4,6-dimethyldipyrido-[1,2-a:3',2' -d] imidazole.

Authors:  L Marrot; E Hebert; G Saint-Ruf; M Leng
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

10.  Phosphates in the Z-DNA dodecamer are flexible, but their P-SAD signal is sufficient for structure solution.

Authors:  Zhipu Luo; Miroslawa Dauter; Zbigniew Dauter
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-06-24
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