Literature DB >> 3713213

A measure of DNA periodicity.

B D Silverman, R Linsker.   

Abstract

A Fourier transform g(n) of a sequence of bases along a given stretch of DNA is defined. The transform is invariant to the labelling of the bases and can therefore be used as a measure of periodicity for segments of DNA with differing base content. It can also be conveniently used to search for base periodicities within large DNA data bases.

Mesh：

Substances：

Year:  1986        PMID： 3713213     DOI： 10.1016/s0022-5193(86)80060-1

Source DB:  PubMed          Journal:  J Theor Biol        ISSN： 0022-5193            Impact factor:   2.691


  26 in total

1.  Gene prediction by spectral rotation measure: a new method for identifying protein-coding regions.

Authors:  Daniel Kotlar; Yizhar Lavner
Journal:  Genome Res       Date:  2003-07-17       Impact factor: 9.043

Review 2.  Assessment of protein coding measures.

Authors:  J W Fickett; C S Tung
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

3.  In silico comparison of bacterial strains using mutual information.

Authors:  D Swati
Journal:  J Biosci       Date:  2007-09       Impact factor: 1.826

4.  A hybrid technique for the periodicity characterization of genomic sequence data.

Authors:  Julien Epps
Journal:  EURASIP J Bioinform Syst Biol       Date:  2009-04-08

5.  SNR of DNA sequences mapped by general affine transformations of the indicator sequences.

Authors:  Jianfeng Shao; Xiaohua Yan; Shuo Shao
Journal:  J Math Biol       Date:  2012-07-21       Impact factor: 2.259

6.  Periodic power spectrum with applications in detection of latent periodicities in DNA sequences.

Authors:  Changchuan Yin; Jiasong Wang
Journal:  J Math Biol       Date:  2016-03-04       Impact factor: 2.259

7.  Sequence periodic pattern of HERV LTRs: a matrix simulation algorithm.

Authors:  Shihua Zhang; Jing Xu; Chaoling Wei
Journal:  J Biosci       Date:  2012-03       Impact factor: 1.826

8.  Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repeats.

Authors:  Vladimir Paar; Nenad Pavin; Ivan Basar; Marija Rosandić; Matko Gluncić; Nils Paar
Journal:  BMC Bioinformatics       Date:  2008-11-03       Impact factor: 3.169

9.  Identification of protein-coding sequences using the hybridization of 18S rRNA and mRNA during translation.

Authors:  Chuanhua Xing; Donald L Bitzer; Winser E Alexander; Mladen A Vouk; Anne-Marie Stomp
Journal:  Nucleic Acids Res       Date:  2008-12-10       Impact factor: 16.971

10.  Genome analysis with inter-nucleotide distances.

Authors:  Vera Afreixo; Carlos A C Bastos; Armando J Pinho; Sara P Garcia; Paulo J S G Ferreira
Journal:  Bioinformatics       Date:  2009-09-16       Impact factor: 6.937
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.