Literature DB >> 3697087

Discrimination of phytochrome dependent light inducible from non-light inducible plant genes. Prediction of a common light-responsive element (LRE) in phytochrome dependent light inducible plant genes.

U Grob1, K Stüber.   

Abstract

We aligned 14 5'-leading sequences of small subunit ribulose-1,5-bisphosphate carboxylase (rbcS) genes. A strong consensus sequence ("CCTTATCAT") was located directly upstream of the TATA-box. The occurrence of this motif in other light dependent phytochrome regulated plant genes led to the calculation of two consensus matrices. With these two matrices we are able to distinguish almost all known light induced plant genes which are phytochrome regulated from non-light induced plant genes indicating, that all these genes share a common light-responsive element (LRE). The results obtained by computer analysis are discussed with regard to experimental data.

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Year:  1987        PMID： 3697087      PMCID： PMC306543          DOI： 10.1093/nar/15.23.9957

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  21 in total

1.  Photosynthesis-associated gene families: differences in response to tissue-specific and environmental factors.

Authors:  J Simpson; M VAN Montagu; L Herrera-Estrella
Journal:  Science       Date:  1986-07-04       Impact factor: 47.728

2.  Organ-specific and light-induced expression of plant genes.

Authors:  R Fluhr; C Kuhlemeier; F Nagy; N H Chua
Journal:  Science       Date:  1986-05-30       Impact factor: 47.728

3.  Enzymic synthesis of an aromatic ring from acetate units. Partial purification and some properties of flavanone synthase from cell-suspension cultures of Petroselinum hortense.

Authors:  F Kreuzaler; K Hahlbrock
Journal:  Eur J Biochem       Date:  1975-08-01

4.  GENEXPERT, a program system for nucleic acid sequence structural interpretation.

Authors:  U Grob; K Stüber
Journal:  Comput Appl Biosci       Date:  1987-09

5.  Compilation and analysis of eukaryotic POL II promoter sequences.

Authors:  P Bucher; E N Trifonov
Journal:  Nucleic Acids Res       Date:  1986-12-22       Impact factor: 16.971

6.  Light regulation of plant gene expression by an upstream enhancer-like element.

Authors:  M P Timko; A P Kausch; C Castresana; J Fassler; L Herrera-Estrella; G Van den Broeck; M Van Montagu; J Schell; A R Cashmore
Journal:  Nature       Date:  1985 Dec 12-18       Impact factor: 49.962

7.  Sequences in the pea rbcS-3A gene have homology to constitutive mammalian enhancers but function as negative regulatory elements.

Authors:  C Kuhlemeier; R Fluhr; P J Green; N H Chua
Journal:  Genes Dev       Date:  1987-05       Impact factor: 11.361

8.  The light-dependent control of chloroplast development in barley (Hordeum vulgare L).

Authors:  K Apel; I Gollmer; A Batschauer
Journal:  J Cell Biochem       Date:  1983       Impact factor: 4.429

9.  Light-stimulated transcription of genes for two chloroplast polypeptides in isolated pea leaf nuclei.

Authors:  T F Gallagher; R J Ellis
Journal:  EMBO J       Date:  1982       Impact factor: 11.598

10.  Light-induced expression of the chimeric chalcone synthase-NPTII gene in tobacco cells.

Authors:  Hildegard Kaulen; Jeff Schell; Fritz Kreuzaler
Journal:  EMBO J       Date:  1986-01       Impact factor: 11.598
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  35 in total

1.  Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data.

Authors:  Matthew E Hudson; Peter H Quail
Journal:  Plant Physiol       Date:  2003-12       Impact factor: 8.340

2.  Synthesis and accumulation of pea plastocyanin in transgenic tobacco plants.

Authors:  D I Last; J C Gray
Journal:  Plant Mol Biol       Date:  1990-02       Impact factor: 4.076

3.  Ancestral multipartite units in light-responsive plant promoters have structural features correlating with specific phototransduction pathways.

Authors:  G R Argüello-Astorga; L R Herrera-Estrella
Journal:  Plant Physiol       Date:  1996-11       Impact factor: 8.340

4.  Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family.

Authors:  Iain W Manfield; Paul F Devlin; Chih-Hung Jen; David R Westhead; Philip M Gilmartin
Journal:  Plant Physiol       Date:  2007-01-05       Impact factor: 8.340

5.  Determination of steady-state mRNA levels of individual chlorophyll a/b binding protein genes of the tomato cab gene family.

Authors:  B Piechulla; J W Kellmann; E Pichersky; E Schwartz; H H Förster
Journal:  Mol Gen Genet       Date:  1991-12

6.  SQUIRREL: Sequence QUery, Information Retrieval and REporting Library. A program package for analyzing signals in nucleic acid sequences for the VAX.

Authors:  C J Gartmann; U Grob
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

7.  Developmental and organ-specific changes in promoter DNA-protein interactions in the tomato rbcS gene family.

Authors:  T Manzara; P Carrasco; W Gruissem
Journal:  Plant Cell       Date:  1991-12       Impact factor: 11.277

8.  Plastocyanin is encoded by a single-copy gene in the pea haploid genome.

Authors:  D I Last; J C Gray
Journal:  Plant Mol Biol       Date:  1989-06       Impact factor: 4.076

9.  Localization of light-inducible and tissue-specific regions of the spinach ribulose bisphosphate carboxylase/oxygenase (rubisco) activase promoter in transgenic tobacco plants.

Authors:  B M Orozco; W L Ogren
Journal:  Plant Mol Biol       Date:  1993-12       Impact factor: 4.076

10.  Structure and expression of a nuclear gene for the PSI-D subunit of photosystem I in Nicotiana sylvestris.

Authors:  Y Yamamoto; H Tsuji; J Obokata
Journal:  Plant Mol Biol       Date:  1993-09       Impact factor: 4.076
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