Literature DB >> 3681991

The potentially Z-DNA-forming sequence d(GTGTACAC) crystallizes as A-DNA.

S Jain1, G Zon, M Sundaralingam.   

Abstract

(GT)n/(CA)n sequences have stimulated much interest because of their frequent occurrence in eukaryotic DNA and their potential for forming the left-handed Z-DNA structure. We here report the X-ray crystal structure of a self-complementary octadeoxynucleotide, d(GTGTACAC), at 2.5 A resolution. The molecule adopts a right-handed double-helical conformation belonging to the A-DNA family. In this alternating purine-pyrimidine DNA minihelix the roll and twist angles show alternations qualitatively consistent with Calladine's rules. The average tilt angle of 9.3 degrees is between the values found in A-DNA (19 degrees) and B-DNA (-6 degrees) fibers. It is envisaged that such intermediate conformations may render diversity to genomic DNA. The base-pair tilt angles and the base-pair displacements from the helix axis are found to be correlated for the known A-DNA double-helical fragments.

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Year:  1987        PMID: 3681991     DOI: 10.1016/0022-2836(87)90616-4

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  8 in total

1.  A note on sequence-dependence of DNA structure.

Authors:  A Galat
Journal:  Eur Biophys J       Date:  1990       Impact factor: 1.733

2.  Crystal structure of the self-complementary 5'-purine start decamer d(GCACGCGTGC) in the A-DNA conformation. II.

Authors:  C Ban; M Sundaralingam
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

3.  Crystal structure of d(GCGCGCG) with 5'-overhang G residues.

Authors:  B Pan; C Ban; M C Wahl; M Sundaralingam
Journal:  Biophys J       Date:  1997-09       Impact factor: 4.033

4.  Crystal structure of the self-complementary 5'-purine start decamer d(GCGCGCGCGC) in the Z-DNA conformation. I.

Authors:  C Ban; B Ramakrishnan; M Sundaralingam
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

5.  Three-dimensional structure of d(GGGATCCC) in the crystalline state.

Authors:  H Lauble; R Frank; H Blöcker; U Heinemann
Journal:  Nucleic Acids Res       Date:  1988-08-25       Impact factor: 16.971

6.  Crystal structure of the A-DNA decamer d(CCIGGCCm5CGG) at 1.6 A showing the unexpected wobble I.m5C base pair.

Authors:  B Ramakrishnan; M Sundaralingam
Journal:  Biophys J       Date:  1995-08       Impact factor: 4.033

7.  Crystal structure analysis of an A-DNA fragment at 1.8 A resolution: d(GCCCGGGC).

Authors:  U Heinemann; H Lauble; R Frank; H Blöcker
Journal:  Nucleic Acids Res       Date:  1987-11-25       Impact factor: 16.971

8.  The DNA binding site of the Xenopus transcription factor IIIA has a non-B-form structure.

Authors:  L Fairall; S Martin; D Rhodes
Journal:  EMBO J       Date:  1989-06       Impact factor: 11.598

  8 in total

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