Literature DB >> 3680234

The refined crystal structure of a fully active semisynthetic ribonuclease at 1.8-A resolution.

P D Martin1, M S Doscher, B F Edwards.   

Abstract

A fully active, semisynthetic analog of bovine ribonuclease A, comprised of residues 1-118 of the molecule in a noncovalent complex with the synthetic peptide analog of residues 111-124, has been crystallized in space group P3(2)21 from a solution of 1.3 M ammonium sulfate and 3.0 M cesium chloride at pH 5.2. The crystallographic structure was determined by rotation and translation searches utilizing the coordinates for ribonuclease A reported by Wlodawer and Sjolin (Wlodawer, A., and Sjolin, L. (1983) Biochemistry 22, 2720-2728) and has been refined at 1.8-A resolution to an agreement factor of 0.204. Most of the structure of the semisynthetic enzyme closely resembles that found in ribonuclease A with the synthetic peptide replacing the C-terminal elements of the naturally occurring enzyme. No redundant structure is seen; residues 114-118 of the larger chain and residues 111-113 of the peptide do not appear in our map. The positions of those residues at or near the active site are very similar to, if not identical with, those previously reported by others, except for histidine 119, which occupies predominantly the B position seen as a minor site by Borkakoti et al. (Borkakoti, N., Moss, D. S., and Palmer, R. A. (1982) Acta Crystallogr. Sect. B Struct. Crystallogr. Cryst. Chem. 38,2210-2217) and not at all by Wlodawer and Sjolin (1983).

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Year:  1987        PMID: 3680234     DOI: 10.2210/pdb1srn/pdb

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  7 in total

1.  Crystal structures of two mutants that have implications for the folding of bovine pancreatic ribonuclease A.

Authors:  M A Pearson; P A Karplus; R W Dodge; J H Laity; H A Scheraga
Journal:  Protein Sci       Date:  1998-05       Impact factor: 6.725

2.  Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.

Authors:  Eri Chatani; Rikimaru Hayashi; Hideaki Moriyama; Tatzuo Ueki
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

3.  NMR study of the positions of His-12 and His-119 in the ribonuclease A-uridine vanadate complex.

Authors:  T D Veenstra; L Lee
Journal:  Biophys J       Date:  1994-07       Impact factor: 4.033

4.  The structures of RNase A complexed with 3'-CMP and d(CpA): active site conformation and conserved water molecules.

Authors:  I Zegers; D Maes; M H Dao-Thi; F Poortmans; R Palmer; L Wyns
Journal:  Protein Sci       Date:  1994-12       Impact factor: 6.725

5.  Histidine pKa shifts accompanying the inactivating Asp121----Asn substitution in a semisynthetic bovine pancreatic ribonuclease.

Authors:  M T Cederholm; J A Stuckey; M S Doscher; L Lee
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-15       Impact factor: 11.205

6.  Structural investigation of catalytically modified F120L and F120Y semisynthetic ribonucleases.

Authors:  V S deMel; M S Doscher; M A Glinn; P D Martin; M L Ram; B F Edwards
Journal:  Protein Sci       Date:  1994-01       Impact factor: 6.725

7.  Crystal structures of murine angiogenin-2 and -3-probing 'structure--function' relationships amongst angiogenin homologues.

Authors:  Shalini Iyer; Daniel E Holloway; K Ravi Acharya
Journal:  FEBS J       Date:  2012-12-11       Impact factor: 5.542

  7 in total

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