Literature DB >> 3658706

Vacuum UV circular dichroism is diagnostic for the left-handed Z form of poly [d(A-C).d(G-T)] and other polydeoxynucleotides.

J H Riazance1, W C Johnson, L P McIntosh, T M Jovin.   

Abstract

Circular dichroism spectra are extended into the vacuum UV to about 178 nm for four polydeoxynucleotides of various sequences capable of assuming the left-handed Z form. It is found that each of these polymers, including those with brominated bases and those with the four different bases, have a characteristic negative feature at short wavelengths when in the Z form. In contrast, the B form only has a positive band between 180 and 200 nm. Furthermore, a blue shift of the short wavelength crossover is diagnostic of the B- to Z-form transition for all polymers studied so far. These results confirm that poly[d(A-C).d(G-T)] can assume the Z form in solution at low concentration.

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Year:  1987        PMID: 3658706      PMCID: PMC306272          DOI: 10.1093/nar/15.18.7627

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC).

Authors:  F M Pohl; T M Jovin
Journal:  J Mol Biol       Date:  1972-06-28       Impact factor: 5.469

2.  A circular dichroism spectrometer for the vacuum ultraviolet.

Authors:  W C Johnson
Journal:  Rev Sci Instrum       Date:  1971-09       Impact factor: 1.523

3.  Polymorphism of DNA double helices.

Authors:  A G Leslie; S Arnott; R Chandrasekaran; R L Ratliff
Journal:  J Mol Biol       Date:  1980-10-15       Impact factor: 5.469

4.  "Alternating B-DNA" conformation for the oligo(dG-dC) duplex in high-salt solution.

Authors:  D J Patel; L L Canuel; F M Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

5.  A Z-like form of poly(dA-dC).poly(dG-dT) in solution?

Authors:  M Vorlíckovă; J Kypr; S Stokrová; J Sponar
Journal:  Nucleic Acids Res       Date:  1982-02-11       Impact factor: 16.971

6.  Conformational transitions of poly(dA-dC).poly(dG-dT) induced by high salt or in ethanolic solution.

Authors:  C Zimmer; S Tymen; C Marck; W Guschlbauer
Journal:  Nucleic Acids Res       Date:  1982-02-11       Impact factor: 16.971

7.  Left-handed DNA helices.

Authors:  S Arnott; R Chandrasekaran; D L Birdsall; A G Leslie; R L Ratliff
Journal:  Nature       Date:  1980-02-21       Impact factor: 49.962

8.  Z-DNA: vacuum ultraviolet circular dichroism.

Authors:  J C Sutherland; K P Griffin; P C Keck; P Z Takacs
Journal:  Proc Natl Acad Sci U S A       Date:  1981-08       Impact factor: 11.205

9.  Ultrapolymorphic DNA: B, A, Z, and Z* conformations of poly(dA-dC).poly(dG-dT).

Authors:  A Woisard; G V Fazakerley
Journal:  Biochemistry       Date:  1986-05-06       Impact factor: 3.162

10.  Conformational properties of poly[d(G-T)].poly[d(C-A)] and poly[d(A-T)] in low- and high-salt solutions: NMR and laser Raman analysis.

Authors:  B G Jenkins; R M Wartell; J L Alderfer
Journal:  Biopolymers       Date:  1986-05       Impact factor: 2.505

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  9 in total

1.  Stabilization of the Z' form of poly(dGdC):poly(dGdC) in solution by multivalent ions relates to the ZII form in crystals.

Authors:  M E Harder; W C Johnson
Journal:  Nucleic Acids Res       Date:  1990-04-25       Impact factor: 16.971

2.  Comparison of the solution and crystal conformations of (G + C)-rich fragments of DNA.

Authors:  M Vorlícková; J A Subirana; J Chládková; I Tejralová; T Huynh-Dinh; L Arnold; J Kypr
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

3.  An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA.

Authors:  B Basham; G P Schroth; P S Ho
Journal:  Proc Natl Acad Sci U S A       Date:  1995-07-03       Impact factor: 11.205

4.  Sequence-dependent cost for Z-form shapes the torsion-driven B-Z transition via close interplay of Z-DNA and DNA bubble.

Authors:  Sook Ho Kim; Hae Jun Jung; Il-Buem Lee; Nam-Kyung Lee; Seok-Cheol Hong
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

5.  Chiroptical detection of condensed nickel(II)-Z-DNA in the presence of the B-DNA via porphyrin exciton coupled circular dichroism.

Authors:  Jung Kyu Choi; Gevorg Sargsyan; Murtaza Shabbir-Hussain; Andrea E Holmes; Milan Balaz
Journal:  J Phys Chem B       Date:  2011-08-03       Impact factor: 2.991

6.  Mercury-induced transitions between right-handed and putative left-handed forms of poly[d(A-T).d(A-T)] and poly[d(G-C).d(G-C)].

Authors:  D W Gruenwedel; M K Cruikshank
Journal:  Nucleic Acids Res       Date:  1989-11-25       Impact factor: 16.971

7.  Conformational transitions of alternating purine-pyrimidine DNAs in perchlorate ethanol solutions.

Authors:  M Vorlícková
Journal:  Biophys J       Date:  1995-11       Impact factor: 4.033

8.  CD evidence that the alternating purine-pyrimidine sequence poly[d(A-C).d(G-T)], but not poly[d(A-T).d(A-T)], undergoes an acid-induced transition to a modified secondary conformation.

Authors:  V P Antao; R L Ratliff; D M Gray
Journal:  Nucleic Acids Res       Date:  1990-07-25       Impact factor: 16.971

9.  Alternating d(G-A) sequences form a parallel-stranded DNA homoduplex.

Authors:  K Rippe; V Fritsch; E Westhof; T M Jovin
Journal:  EMBO J       Date:  1992-10       Impact factor: 11.598

  9 in total

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