Literature DB >> 3633085

A statistical method for correlating tRNA sequence with amino acid specificity.

T Atilgan, H B Nicholas, W H McClain.   

Abstract

A statistical method for finding the nucleotide positions in tRNA sequences that correlate with amino acid specificity has been developed. The procedure involves finding the subset of nucleotide positions and groups of positions where the marginal density of one amino acid tRNA class does not overlap that of any other amino acid class. The procedure is an application of a statistical method known as the Expectation Maximization algorithm.

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Year:  1986        PMID： 3633085      PMCID： PMC339420          DOI： 10.1093/nar/14.1.375

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  9 in total

1.  Cloning of the glutamyl-tRNA synthetase (gltX) gene from Pseudomonas aeruginosa.

Authors:  C V Franklund; J B Goldberg
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

2.  Mosaic tile model for tRNA-enzyme recognition.

Authors:  S V Steinberg; L L Kisselev
Journal:  Nucleic Acids Res       Date:  1993-04-25       Impact factor: 16.971

3.  The use of sequence comparison to detect 'identities' in tRNA genes.

Authors:  J I Sagara; S Shimizu; T Kawabata; S Nakamura; M Ikeguchi; K Shimizu
Journal:  Nucleic Acids Res       Date:  1998-04-15       Impact factor: 16.971

4.  Distinctive acceptor-end structure and other determinants of Escherichia coli tRNAPro identity.

Authors:  W H McClain; J Schneider; K Gabriel
Journal:  Nucleic Acids Res       Date:  1994-02-11       Impact factor: 16.971

5.  Nucleotides that determine Escherichia coli tRNA(Arg) and tRNA(Lys) acceptor identities revealed by analyses of mutant opal and amber suppressor tRNAs.

Authors:  W H McClain; K Foss; R A Jenkins; J Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  1990-12       Impact factor: 11.205

6.  A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops.

Authors:  K Tomita; T Ogawa; T Uozumi; K Watanabe; H Masaki
Journal:  Proc Natl Acad Sci U S A       Date:  2000-07-18       Impact factor: 11.205

7.  Purification, crystallization and preliminary X-ray analysis of the catalytic domain of the Escherichia coli tRNase colicin D.

Authors:  Kazutoshi Takahashi; Tetsuhiro Ogawa; Makoto Hidaka; Kanju Ohsawa; Haruhiko Masaki; Shunsuke Yajima
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-12-16

8.  Mapping hidden potential identity elements by computing the average discriminating power of individual tRNA positions.

Authors:  Aron Szenes; Gábor Pál
Journal:  DNA Res       Date:  2012-02-28       Impact factor: 4.458

9.  In silico detection of tRNA sequence features characteristic to aminoacyl-tRNA synthetase class membership.

Authors:  Eena Jakó; Péter Ittzés; Aron Szenes; Adám Kun; Eörs Szathmáry; Gábor Pál
Journal:  Nucleic Acids Res       Date:  2007-08-17       Impact factor: 16.971
  9 in total

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