Literature DB >> 36273230

Epigenetic control of chromosome-associated lncRNA genes essential for replication and stability.

Michael B Heskett1,2, Athanasios E Vouzas3, Leslie G Smith4, Phillip A Yates4, Christopher Boniface5, Eric E Bouhassira6, Paul T Spellman2,5, David M Gilbert7, Mathew J Thayer8.   

Abstract

ASARs are long noncoding RNA genes that control replication timing of entire human chromosomes in cis. The three known ASAR genes are located on human chromosomes 6 and 15, and are essential for chromosome integrity. To identify ASARs on all human chromosomes we utilize a set of distinctive ASAR characteristics that allow for the identification of hundreds of autosomal loci with epigenetically controlled, allele-restricted behavior in expression and replication timing of coding and noncoding genes, and is distinct from genomic imprinting. Disruption of noncoding RNA genes at five of five tested loci result in chromosome-wide delayed replication and chromosomal instability, validating their ASAR activity. In addition to the three known essential cis-acting chromosomal loci, origins, centromeres, and telomeres, we propose that all mammalian chromosomes also contain "Inactivation/Stability Centers" that display allele-restricted epigenetic regulation of protein coding and noncoding ASAR genes that are essential for replication and stability of each chromosome.
© 2022. The Author(s).

Entities:  

Year:  2022        PMID: 36273230     DOI: 10.1038/s41467-022-34099-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   17.694


  74 in total

1.  Engineering translocations with delayed replication: evidence for cis control of chromosome replication timing.

Authors:  Kevin S Breger; Leslie Smith; Mathew J Thayer
Journal:  Hum Mol Genet       Date:  2005-08-22       Impact factor: 6.150

2.  An autosomal locus that controls chromosome-wide replication timing and mono-allelic expression.

Authors:  Eric P Stoffregen; Nathan Donley; Daniel Stauffer; Leslie Smith; Mathew J Thayer
Journal:  Hum Mol Genet       Date:  2011-03-31       Impact factor: 6.150

3.  Chromosomes with delayed replication timing lead to checkpoint activation, delayed recruitment of Aurora B and chromosome instability.

Authors:  B H Chang; L Smith; J Huang; M Thayer
Journal:  Oncogene       Date:  2006-09-25       Impact factor: 9.867

4.  Allele-specific genome-wide profiling in human primary erythroblasts reveal replication program organization.

Authors:  Rituparna Mukhopadhyay; Julien Lajugie; Nicolas Fourel; Ari Selzer; Michael Schizas; Boris Bartholdy; Jessica Mar; Chii Mei Lin; Melvenia M Martin; Michael Ryan; Mirit I Aladjem; Eric E Bouhassira
Journal:  PLoS Genet       Date:  2014-05-01       Impact factor: 5.917

5.  ASAR15, A cis-acting locus that controls chromosome-wide replication timing and stability of human chromosome 15.

Authors:  Nathan Donley; Leslie Smith; Mathew J Thayer
Journal:  PLoS Genet       Date:  2015-01-08       Impact factor: 5.917

6.  L1 retrotransposon antisense RNA within ASAR lncRNAs controls chromosome-wide replication timing.

Authors:  Emily J Platt; Leslie Smith; Mathew J Thayer
Journal:  J Cell Biol       Date:  2017-12-29       Impact factor: 10.539

7.  Allele-specific control of replication timing and genome organization during development.

Authors:  Juan Carlos Rivera-Mulia; Andrew Dimond; Daniel Vera; Claudia Trevilla-Garcia; Takayo Sasaki; Jared Zimmerman; Catherine Dupont; Joost Gribnau; Peter Fraser; David M Gilbert
Journal:  Genome Res       Date:  2018-05-07       Impact factor: 9.043

8.  Asynchronous replication, mono-allelic expression, and long range Cis-effects of ASAR6.

Authors:  Nathan Donley; Eric P Stoffregen; Leslie Smith; Christina Montagna; Mathew J Thayer
Journal:  PLoS Genet       Date:  2013-04-04       Impact factor: 5.917

9.  Single-cell replication profiling to measure stochastic variation in mammalian replication timing.

Authors:  Vishnu Dileep; David M Gilbert
Journal:  Nat Commun       Date:  2018-01-30       Impact factor: 14.919

10.  Reciprocal monoallelic expression of ASAR lncRNA genes controls replication timing of human chromosome 6.

Authors:  Michael B Heskett; Leslie G Smith; Paul Spellman; Mathew J Thayer
Journal:  RNA       Date:  2020-03-06       Impact factor: 4.942

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