Literature DB >> 36272083

Navigation and Use of Custom Tracks within the Axolotl Genome Browser.

Sergej Nowoshilow1, Elly M Tanaka2.   

Abstract

The availability of the chromosome-scale axolotl genome sequences has made it possible to explore genome evolution, perform cross-species comparisons, and use additional sequencing data to analyze both genome-wide features and individual genes. Here, we will focus on the UCSC genome browser and demonstrate in a step-by-step manner how to use it to integrate different data to approach a broad question of the Fgf8 locus evolution and analyze the neighborhood of a gene that was reported missing in axolotl - Pax3.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Annotation; Custom Tracks; Gene Expression; Genome Browser; Genome Evolution; Synteny

Year:  2023        PMID: 36272083     DOI: 10.1007/978-1-0716-2659-7_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  1 in total

1.  Epigenetic mechanisms of genomic imprinting: common themes in the regulation of imprinted regions in mammals, plants, and insects.

Authors:  William A Macdonald
Journal:  Genet Res Int       Date:  2012-02-15
  1 in total

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