Literature DB >> 36269418

A novel statovirus identified in fecal samples from wild geladas in the Ethiopian highlands.

India A Schneider-Crease1,2,3, Kenneth L Chiou4,5, Isabella L Moya4,5, Alemayehu Lemma6, Ferewihot Ayele6, Abebaw Azanaw Haile7, Fanuel Kebede7, Belayneh Abebe8, Thore J Bergman9,10, Jacinta C Beehner9,11, Amy Lu12, Michael C Lund5,13, Joy M Custer13, Simona Kraberger13, Noah Snyder-Mackler4,5, Arvind Varsani4,5,13,14.   

Abstract

We present a novel statovirus in geladas (Theropithecus gelada), graminivorous primates endemic to the Ethiopian highlands. Using a high-throughput sequencing approach, we identified contiguous sequences in feces from two adult female geladas in the Simien Mountains National Park, Ethiopia, that share similarities to statoviruses. Our phylogenetic analysis of the whole genome, as well as the RNA-dependent RNA polymerase (RdRp) and capsid protein (CP) amino acid sequences, revealed that the gelada statoviruses cluster with those from other primates (laboratory populations of Macaca nemestrina and Macaca mulatta). As the first report of statovirus in wild primates, this finding contributes to our understanding of the phylogenetic and geographic distribution of statoviruses and their hosts.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Austria, part of Springer Nature.

Entities:  

Keywords:  Ethiopia; Geladas; Nonhuman primates; Statovirus; Theropithecus gelada

Year:  2022        PMID: 36269418     DOI: 10.1007/s00705-022-05588-3

Source DB:  PubMed          Journal:  Arch Virol        ISSN: 0304-8608            Impact factor:   2.685


  14 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

Review 2.  The healthy human virome: from virus-host symbiosis to disease.

Authors:  Eugene V Koonin; Valerian V Dolja; Mart Krupovic
Journal:  Curr Opin Virol       Date:  2021-02-27       Impact factor: 7.090

3.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

4.  SDT: a virus classification tool based on pairwise sequence alignment and identity calculation.

Authors:  Brejnev Muhizi Muhire; Arvind Varsani; Darren Patrick Martin
Journal:  PLoS One       Date:  2014-09-26       Impact factor: 3.240

5.  Identifying wildlife reservoirs of neglected taeniid tapeworms: Non-invasive diagnosis of endemic Taenia serialis infection in a wild primate population.

Authors:  India Schneider-Crease; Randi H Griffin; Megan A Gomery; Pierre Dorny; John C Noh; Sukwan Handali; Holly M Chastain; Patricia P Wilkins; Charles L Nunn; Noah Snyder-Mackler; Jacinta C Beehner; Thore J Bergman
Journal:  PLoS Negl Trop Dis       Date:  2017-07-13

6.  metaSPAdes: a new versatile metagenomic assembler.

Authors:  Sergey Nurk; Dmitry Meleshko; Anton Korobeynikov; Pavel A Pevzner
Journal:  Genome Res       Date:  2017-03-15       Impact factor: 9.043

7.  TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses.

Authors:  Ben C Stöver; Kai F Müller
Journal:  BMC Bioinformatics       Date:  2010-01-05       Impact factor: 3.169

8.  PROMALS3D: a tool for multiple protein sequence and structure alignments.

Authors:  Jimin Pei; Bong-Hyun Kim; Nick V Grishin
Journal:  Nucleic Acids Res       Date:  2008-02-20       Impact factor: 16.971

9.  Genomic signatures of high-altitude adaptation and chromosomal polymorphism in geladas.

Authors:  Kenneth L Chiou; Mareike C Janiak; India A Schneider-Crease; Sharmi Sen; Ferehiwot Ayele; Idrissa S Chuma; Sascha Knauf; Alemayehu Lemma; Anthony V Signore; Anthony M D'Ippolito; Belayneh Abebe; Abebaw Azanaw Haile; Fanuel Kebede; Peter J Fashing; Nga Nguyen; Colleen McCann; Marlys L Houck; Jeffrey D Wall; Andrew S Burrell; Christina M Bergey; Jeffrey Rogers; Jane E Phillips-Conroy; Clifford J Jolly; Amanda D Melin; Jay F Storz; Amy Lu; Jacinta C Beehner; Thore J Bergman; Noah Snyder-Mackler
Journal:  Nat Ecol Evol       Date:  2022-03-24       Impact factor: 19.100

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