| Literature DB >> 36263030 |
Vivek P Chavda1, Qian Yao2, Lalitkumar K Vora3, Vasso Apostolopoulos4, Chirag A Patel5, Rajashri Bezbaruah6, Aayushi B Patel7, Zhe-Sheng Chen8.
Abstract
In December 2019, an outbreak emerged of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) which leads to coronavirus disease 2019 (COVID-19). The World Health Organisation announced the outbreak a global health emergency on 30 January 2020 and by 11 March 2020 it was declared a pandemic. The spread and severity of the outbreak took a heavy toll and overburdening of the global health system, particularly since there were no available drugs against SARS-CoV-2. With an immediate worldwide effort, communication, and sharing of data, large amounts of funding, researchers and pharmaceutical companies immediately fast-tracked vaccine development in order to prevent severe disease, hospitalizations and death. A number of vaccines were quickly approved for emergency use, and worldwide vaccination rollouts were immediately put in place. However, due to several individuals being hesitant to vaccinations and many poorer countries not having access to vaccines, multiple SARS-CoV-2 variants quickly emerged that were distinct from the original variant. Uncertainties related to the effectiveness of the various vaccines against the new variants as well as vaccine specific-side effects have remained a concern. Despite these uncertainties, fast-track vaccine approval, manufacturing at large scale, and the effective distribution of COVID-19 vaccines remain the topmost priorities around the world. Unprecedented efforts made by vaccine developers/researchers as well as healthcare staff, played a major role in distributing vaccine shots that provided protection and/or reduced disease severity, and deaths, even with the delta and omicron variants. Fortunately, even for those who become infected, vaccination appears to protect against major disease, hospitalisation, and fatality from COVID-19. Herein, we analyse ongoing vaccination studies and vaccine platforms that have saved many deaths from the pandemic.Entities:
Keywords: COVID-19 outbreak; SARS-CoV-2 variants; delta variant; omicron variant; vaccine; variant of concern
Mesh:
Substances:
Year: 2022 PMID: 36263030 PMCID: PMC9574046 DOI: 10.3389/fimmu.2022.961198
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 8.786
Figure 1SARS-CoV-2 structural proteins and genomic organization.
Figure 2SARS-CoV-2 mutations and viral variants. (A) Radial graph of emerging SARS-CoV-2 variants from December 2021 to August 2022 (built with nextstrain/ncov). (B) Frequencies of clades from March 2022 to August 2022 (from nextstrain.org), and (C) classification of SARS-CoV-2 omicron variant based on a clade tree (created with Biorender.com).
SARS-CoV-2 variants, mutations and their impact.
| WHO variant name | Sub variants | Date first identified/Country | Spike protein mutations | Other mutations | Impact | Ref. |
|---|---|---|---|---|---|---|
| Alpha | B.1.1.7 | November 2020/UK | HV69-70del, Y144del, N501Y, A570D, D614G, P681H, T716I, S982A, D1118H | D3L, R203K, G204R, S235F | • Increased transmission | ( |
| Beta | B.1.351 | May 2020/South Africa | L18F, D80A, D215G, 242-244del, R246I, K417N, E484K, N501Y, D614G, A701V | T205I | • Increased transmission | ( |
| Gamma | B.1.1.248 (P.1 and P.2) | Nov-2020/Brazil | K417T, E484K, and N501Y | D138Y, R190S | • Increase affinity to ACE 2 receptor | ( |
| Delta | B.1.617.2 (Delta) | October 2020/India | T19R, G142D, EF156-157del, R158G, L452R, T478K, D614G, P681R, D950N | D63G, R203M, D377Y | • Decreased ability of immune system to identify the virus. | ( |
| (Delta plus) | 03 March 2022/India | K417N, T19R, G142D, EF156-157del, R158G, L452R, T478K, D614G, P681R, D950N | D63G, R203M, D377Y | • It has higher tolerance to monoclonal antibodies compare to delta variant | ( | |
| Omicron | BA.1 | 08 November 2021/ Botswana, South Africa | A67V, HV69-70del, T95I, G142D, VYY143-145del, N211del, L212I, ins214EPE, G339D, S371L, S373P, S375F, K417N, N440K, G446S, S477N, T478K, E484A, Q493R, G496S, Q498R, N501Y, Y505H, T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F | nsp3 (K38R, V1069I, Δ1265, L1266I, A1892T), nsp4 (T492I), nsp5 (P132H), nsp6 (Δ105-107, A189 V), nsp12 (P323L), and nsp14 (I42V). Nsp3 (Plpro) and nsp5 (3Clpro, main protease) | • Changes in the shape of protein to which different class of antibody binds. | ( |
| BA.2 | 22 October 2021/Philippines | BA.2 shares 32 mutations with BA.1 but has 28 distinct ones. RBD mutations: 371F, T376A, D405N, and R408S, and BA.3 has S371F, D405N, and G446S | • All these variants have higher transmission and stronger immune invasion compare to BA.1 | ( | ||
| BA.3 | 23 November 2021/northwest South Africa | N501Y, Q498R, H655Y, N679K, and P681H. | ||||
| BA.4 | 12 May 2022/South Africa, Botswana, Denmark, UK | S:del69/70, S:L452R, S:F486V, S:Q493R reversion | ||||
| BA.5 | 25 May 2022/Portugal | BA.2-like constellation in the spike protein + S:del69/70, S:L452R, S:F486V, S:Q493R reversion |
Figure 3Hybrid variants of SARS-CoV-2 (Created with BioRender.com).
Figure 4COVID-19 vaccine platforms used. (Some elements are created with BioRender.com).
Figure 5Immune reaction after vaccination. After intramuscular (IM), intradermal (ID) or subcutaneous (SC) vaccine delivery, dermal dendritic cells (DCs) take up antigens and migrate to draining lymph nodes to stimulate T cells (CD8+ T cells and CD4+ T cells). Plasma cells secrete antibodies and memory B cells. CD8+ T cells can be stimulated by Th1 cytokines and in turn acquire the ability to attack the infected cells. However, imbalanced immune responses have the potential to cause pulmonary immunopathology, partially due to an aberrant Th2 response or antibody-dependent enhancement (ADE). Created with BioRender.com.
Coronavirus variants and effectiveness of the current vaccines.
| Vaccine candidate | % Efficacy reported during Phase 3 trial | Specific Comments regarding effectiveness | Effectiveness against variants | Reference | |||||
|---|---|---|---|---|---|---|---|---|---|
| Alpha | Beta | Gamma | Delta | Epsilon | Omicron | ||||
| Comirnaty (BNT162b2) | 94.6% | • This vaccine’s efficacy against the Delta infection peaked at 68% (95%CI: 64-71%) and 62% (95%CI: 57-66%). | Yes, 95% (CI): 1.2–2.1) | Yes, (95% CI: 6.4–14.4) | Yes, (95% CI: 1.6–3) | Yes, at 68% (95%CI: 64-71%) and 62% (95%CI: 57-66%). | Yes | No, one dosage, neither age group is protected | ( |
| Spikevax | 94.1% | • One dosage of mRNA-1273 had lesser protection against all variants than several doses, with protection against mu at 45.8% (0.0% to 88.9%) and alpha at 90.1% (82.9% to 94.2%). | Yes, 90.1% (82.9% to 94.2%) | Yes, leaser effective | Yes, lesser effective | Yes, 14-60 days (94.1% (90.5% to 96.3%) | No | No | ( |
| Vaxzevria and Covishield | – | • Vaxzevria was efficient but because data was only provided after a single dosage rather than the recommended two dose schedule where potency is boosted. | Yes, 72% | Yes, 50% | Yes, 50% | Yes, 70% | No | No | ( |
| Sputnik V | 91% | • The studies show that Sputnik V counteracts the Omicron variant by producing a strong antibody response. | Yes, 85.7% (95% CI 84.3–86.9%) and 97.5% (95% CI 95.6–98.6% | Yes, 80% | No | Yes, | Yes | Yes, neutralize with strong RBD -specific IgG antibodies, 83.3% more efficacy than Pfizer, | ( |
| Sputnik light | 79.4% | • Using Sputnik Light as a booster enhances the virus’s ability to neutralize the Omicron variant. | Yes, less effective | No | Yes, 70% | Yes, effectiveness: 88.61%, (18-29-year-old group), 88.61%(88.61%) | No | Yes, Neutralize variants | ( |
| COVID-19 Vaccine Janssen (JNJ-78436735; Ad26.COV2.S) | 85% | • This vaccine was proven to be effective in clinical trials against multiple variants, especially B1.351 and P.2. | No | Yes, more effective | Yes, more effective | No | No | Yes, lesser efficacy | ( |
| CoronaVac | 51% against symptomatic cases | • The estimated efficiency of Sinovac-CoronaVac among health professionals in Manaus, Brazil, was determined in a survey study, although there is currently inadequate data for Omicron. | Yes, 53–66% | No | Yes, 51% to 84% | Yes, 91%-93% | No | No | ( |
| BBIBP-CorV | 78.1% against symptomatic cases | • The efficacy of the BBIBP-CorV vaccine in severe cases was 80%, 92%, and 97% against hospitalisation, critical care admission, and death, respectively. | No | Yes, neutralizing antibody responses | No | Yes, neutralizing antibody responses | No | No | ( |
| Covaxin (BBV152) | 77.8% | • The effectiveness of the vaccine against all variant-related COVID-19 diseases was 71%, with efficacy against Kappa and Delta being 90% and 65%, respectively. | Yes, 71% | Yes, 71% | Yes, 71% | Yes, 65% | Yes, 71% | No | ( |
Figure 6Reasons for fast-track vaccines for COVID-19.
Figure 7Ethical considerations for vaccine research for COVID-19 (162, 163).