Literature DB >> 36253973

Identification of pyroptosis-related gene signature for predicting prognosis of patients with pancreatic cancer using bioinformatics.

Zhongbo Xu1, Wenyan Yu2, Lin Li1, Guojuan Wang3.   

Abstract

Pancreatic cancer, a common digestive system malignancy, is dubbed the "king of cancers". The role of pyrophosis-related genes (PRGs) in pancreatic cancer prognosis is yet unknown. In pancreatic cancer and normal tissue, we discovered 9 PRGs that are expressed differently in pancreatic cancer and healthy tissue. Based on the differential expression of PRGs, 2 clusters of pancreatic cancer cases could be identified. The 2 groups had significant disparities in total survival time. The prognostic model of a 5-PRGs signature was created using least absolute shrinkage and selection operator (LASSO) method. The median risk score was used to split pancreatic cancer patients in The Cancer Genome Atlas (TCGA) cohort into 2 groups: low risk and high risk. Patients classified as low-risk had significantly higher survival rates than those classified as high-risk (P < .01). The same results were obtained by validating them against the Gene Expression Omnibus database (P = .030). Cox regression statistical analysis showed that risk score was an independent predictor of overall survival in pancreatic cancer patients. Functional enrichment analysis revealed that apoptosis, cell proliferation, and cell cycle-related biological processes and signaling pathways were enriched. Additionally, the immunological status of the high-risk group worsened. In conclusion, a novel pyroptosis-related gene signature can be used to predict pancreatic cancer patient prognosis.
Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 36253973      PMCID: PMC9575720          DOI: 10.1097/MD.0000000000031043

Source DB:  PubMed          Journal:  Medicine (Baltimore)        ISSN: 0025-7974            Impact factor:   1.817


  41 in total

1.  Downregulation of gasdermin D promotes gastric cancer proliferation by regulating cell cycle-related proteins.

Authors:  Wei Jie Wang; Di Chen; Ming Zuo Jiang; Bing Xu; Xiao Wei Li; Yi Chu; Yu Jie Zhang; Ren Mao; Jie Liang; Dai Ming Fan
Journal:  J Dig Dis       Date:  2018-02       Impact factor: 2.325

2.  Cancer statistics, 2019.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2019-01-08       Impact factor: 508.702

3.  The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.

Authors:  Damian Szklarczyk; Annika L Gable; Katerina C Nastou; David Lyon; Rebecca Kirsch; Sampo Pyysalo; Nadezhda T Doncheva; Marc Legeay; Tao Fang; Peer Bork; Lars J Jensen; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

Review 4.  Role of pyroptosis in cancer and its therapeutic regulation.

Authors:  Abdullah Al Mamun; Anjuman Ara Mimi; Md Abdul Aziz; Muhammad Zaeem; Tanvir Ahmed; Fahad Munir; Jian Xiao
Journal:  Eur J Pharmacol       Date:  2021-08-26       Impact factor: 4.432

5.  Down-regulation of miR-150 induces cell proliferation inhibition and apoptosis in non-small-cell lung cancer by targeting BAK1 in vitro.

Authors:  Xiao-yan Gu; Jun Wang; Yi-zhou Luo; Qiang Du; Ruo-ran Li; Hui Shi; Tian-pei Yu
Journal:  Tumour Biol       Date:  2014-02-16

Review 6.  PI3K and AKT: Unfaithful Partners in Cancer.

Authors:  Seraina Faes; Olivier Dormond
Journal:  Int J Mol Sci       Date:  2015-09-03       Impact factor: 5.923

7.  Piperlongumine restores the balance of autophagy and apoptosis by increasing BCL2 phosphorylation in rotenone-induced Parkinson disease models.

Authors:  Jia Liu; Weijin Liu; Yongquan Lu; Hao Tian; Chunli Duan; Lingling Lu; Ge Gao; Xia Wu; Xiaomin Wang; Hui Yang
Journal:  Autophagy       Date:  2018-02-21       Impact factor: 16.016

8.  Cleavage of GSDME by caspase-3 determines lobaplatin-induced pyroptosis in colon cancer cells.

Authors:  Junhui Yu; Shan Li; Jie Qi; Zilu Chen; Yunhua Wu; Jing Guo; Kai Wang; Xuejun Sun; Jianbao Zheng
Journal:  Cell Death Dis       Date:  2019-02-25       Impact factor: 8.469

Review 9.  Pyroptosis: mechanisms and diseases.

Authors:  Pian Yu; Xu Zhang; Nian Liu; Ling Tang; Cong Peng; Xiang Chen
Journal:  Signal Transduct Target Ther       Date:  2021-03-29

10.  Cold atmospheric plasma induces GSDME-dependent pyroptotic signaling pathway via ROS generation in tumor cells.

Authors:  Xiaorui Yang; Guodong Chen; Kwan Ngok Yu; Miaomiao Yang; Shengjie Peng; Jie Ma; Feng Qin; Wei Cao; Shujun Cui; Lili Nie; Wei Han
Journal:  Cell Death Dis       Date:  2020-04-27       Impact factor: 9.685

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.