| Literature DB >> 36250116 |
Hélène Cattey1, Gilles Boni1, Sylvie Pourchet1, Laurent Plasseraud1.
Abstract
The title compound, C13H16O3 [GE-isoEu; systematic name: 2-({2-meth-oxy-4-[(E)-1-propen-1-yl]phen-oxy}meth-yl)oxirane], which crystallizes in the triclinic P space group, was synthesized in one step from iso-eugenol, a bio-based phenyl-propanoid, with an excess of epi-chloro-hydrin. Colourless prismatic crystals suitable for X-ray diffraction were obtained from a mixture of ethyl acetate and cyclo-hexane, during purification by column chromatography on silica gel. GE-isoEu, which corresponds to the trans isomer of the monoglycidyl ether of iso-eugenol, is based on a 1,2,4-tris-ubstituted benzene ring by diglycidyl ether, meth-oxy and 1-(E)-propenyl groups, respectively. In the crystal, mol-ecules are organized through offset π-stacking inter-actions. Chemically, GE-isoEu constitutes an inter-mediate in the synthesis protocol of 2-[3-meth-oxy-4-(2-oxiranylmeth-oxy)phen-yl]-3-methyl-oxirane (GEEp-isoEu), a di-epoxy-dized monomer used in the manufacturing of thermosetting resins and intended for the elaboration of bio-composites. © Cattey et al. 2022.Entities:
Keywords: bio-based molecule; crystal structure; isoeugenol derivative; oxirane; phenylpropene
Year: 2022 PMID: 36250116 PMCID: PMC9535827 DOI: 10.1107/S2056989022009264
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of GE-isoEu with displacement ellipsoids at the 30% probability level.
Figure 2Mercury representation (Macrae et al., 2020 ▸; colour code: C dark grey, O red; hydrogen atoms are omitted for clarity) showing intermolecular interactions in the crystal structure of the title compound with hydrogen bonding (blue dotted line, C—H⋯O distance) and π–π stacking (red dotted line, centroid–centroid distance).
Figure 3Stacking representation of GE-isoEu viewed down the a axis (colour code: C dark grey, O red, H white; Mercury representation; Macrae et al., 2020 ▸).
Figure 4Synthesis protocol and reaction conditions leading to GE-isoEu.
Experimental details
| Crystal data | |
| Chemical formula | C13H16O3 |
|
| 220.26 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 150 |
|
| 4.5931 (5), 8.9134 (9), 15.0764 (18) |
| α, β, γ (°) | 74.808 (3), 85.309 (4), 77.430 (3) |
|
| 581.18 (11) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.5 × 0.15 × 0.15 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII |
| Absorption correction | Multi-scan ( |
|
| 0.668, 0.746 |
| No. of measured, independent and observed [ | 17290, 2647, 1865 |
|
| 0.038 |
| (sin θ/λ)max (Å−1) | 0.650 |
| Refinement | |
|
| 0.049, 0.128, 1.03 |
| No. of reflections | 2647 |
| No. of parameters | 147 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.33, −0.19 |
Computer programs: APEX3 (Bruker, 2020 ▸), SAINT (Bruker, 2016 ▸), SHELXT2014/5 (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| C13H16O3 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 5145 reflections | |
| θ = 2.5–26.6° | |
| α = 74.808 (3)° | µ = 0.09 mm−1 |
| β = 85.309 (4)° | |
| γ = 77.430 (3)° | PRISM, colourless |
| 0.5 × 0.15 × 0.15 mm |
| Bruker kappa APEXII diffractometer | 2647 independent reflections |
| Radiation source: X-ray tube, Siemens KFF Mo 2K-180 | 1865 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3 pixels mm-1 | θmax = 27.5°, θmin = 2.4° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Krause | |
| 17290 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2647 reflections | (Δ/σ)max < 0.001 |
| 147 parameters | Δρmax = 0.33 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O3 | 0.5215 (3) | 0.37762 (14) | 0.60436 (8) | 0.0300 (3) | |
| O2 | 0.8022 (3) | 0.53432 (15) | 0.67363 (9) | 0.0327 (3) | |
| O1 | 0.7925 (3) | 0.88375 (17) | 0.59690 (12) | 0.0498 (4) | |
| C5 | 0.6121 (4) | 0.3053 (2) | 0.69197 (11) | 0.0234 (4) | |
| C6 | 0.5628 (4) | 0.1597 (2) | 0.74236 (12) | 0.0262 (4) | |
| H6 | 0.457467 | 0.102195 | 0.715929 | 0.031* | |
| C4 | 0.7670 (4) | 0.3919 (2) | 0.73067 (12) | 0.0247 (4) | |
| C7 | 0.6660 (4) | 0.0952 (2) | 0.83221 (12) | 0.0307 (4) | |
| C9 | 0.8683 (4) | 0.3293 (2) | 0.81886 (13) | 0.0322 (4) | |
| H9 | 0.973015 | 0.386713 | 0.845569 | 0.039* | |
| C3 | 0.9823 (4) | 0.6233 (2) | 0.70261 (14) | 0.0319 (4) | |
| H3A | 1.174343 | 0.554383 | 0.725793 | 0.038* | |
| H3B | 0.878503 | 0.670214 | 0.752225 | 0.038* | |
| C8 | 0.8175 (4) | 0.1822 (2) | 0.86875 (13) | 0.0356 (5) | |
| H8 | 0.888622 | 0.140217 | 0.929532 | 0.043* | |
| C10 | 0.3618 (4) | 0.2968 (2) | 0.56109 (12) | 0.0288 (4) | |
| H10A | 0.312228 | 0.360518 | 0.498608 | 0.043* | |
| H10B | 0.177676 | 0.280713 | 0.596581 | 0.043* | |
| H10C | 0.485826 | 0.193544 | 0.558386 | 0.043* | |
| C11 | 0.6167 (5) | −0.0610 (2) | 0.88692 (13) | 0.0393 (5) | |
| H11 | 0.697432 | −0.096779 | 0.946634 | 0.047* | |
| C2 | 1.0334 (4) | 0.7498 (2) | 0.62068 (15) | 0.0376 (5) | |
| H2 | 1.143379 | 0.712477 | 0.567846 | 0.045* | |
| C12 | 0.4742 (5) | −0.1566 (2) | 0.86288 (15) | 0.0462 (6) | |
| H12 | 0.392242 | −0.122483 | 0.803335 | 0.055* | |
| C1 | 1.0655 (5) | 0.9043 (2) | 0.62760 (18) | 0.0450 (5) | |
| H1A | 1.065235 | 0.921634 | 0.689846 | 0.054* | |
| H1B | 1.195933 | 0.961206 | 0.581395 | 0.054* | |
| C13 | 0.4301 (6) | −0.3142 (3) | 0.92108 (17) | 0.0583 (7) | |
| H13A | 0.509844 | −0.396339 | 0.888173 | 0.087* | |
| H13B | 0.216596 | −0.310609 | 0.934385 | 0.087* | |
| H13C | 0.534885 | −0.338975 | 0.978846 | 0.087* |
| O3 | 0.0366 (7) | 0.0279 (7) | 0.0274 (6) | −0.0150 (5) | −0.0068 (5) | −0.0015 (5) |
| O2 | 0.0337 (7) | 0.0320 (7) | 0.0361 (7) | −0.0159 (5) | −0.0066 (6) | −0.0057 (6) |
| O1 | 0.0354 (8) | 0.0392 (9) | 0.0766 (11) | −0.0119 (7) | −0.0132 (7) | −0.0106 (8) |
| C5 | 0.0197 (8) | 0.0257 (9) | 0.0231 (8) | −0.0015 (7) | 0.0001 (6) | −0.0060 (7) |
| C6 | 0.0266 (9) | 0.0240 (9) | 0.0268 (9) | −0.0029 (7) | 0.0019 (7) | −0.0068 (7) |
| C4 | 0.0185 (8) | 0.0255 (9) | 0.0290 (9) | −0.0020 (7) | 0.0002 (7) | −0.0071 (7) |
| C7 | 0.0323 (10) | 0.0251 (9) | 0.0276 (9) | 0.0058 (7) | 0.0037 (7) | −0.0052 (7) |
| C9 | 0.0275 (9) | 0.0362 (11) | 0.0331 (10) | −0.0001 (8) | −0.0045 (8) | −0.0130 (8) |
| C3 | 0.0215 (9) | 0.0350 (10) | 0.0444 (11) | −0.0065 (7) | −0.0044 (8) | −0.0175 (9) |
| C8 | 0.0390 (11) | 0.0352 (11) | 0.0259 (9) | 0.0063 (8) | −0.0046 (8) | −0.0064 (8) |
| C10 | 0.0315 (9) | 0.0293 (10) | 0.0288 (9) | −0.0132 (7) | −0.0015 (7) | −0.0070 (7) |
| C11 | 0.0492 (12) | 0.0295 (11) | 0.0281 (10) | 0.0056 (9) | 0.0039 (9) | −0.0005 (8) |
| C2 | 0.0257 (10) | 0.0380 (11) | 0.0545 (13) | −0.0114 (8) | 0.0037 (9) | −0.0188 (10) |
| C12 | 0.0630 (15) | 0.0281 (11) | 0.0378 (12) | −0.0021 (10) | 0.0079 (10) | −0.0001 (9) |
| C1 | 0.0323 (11) | 0.0379 (12) | 0.0731 (16) | −0.0144 (9) | −0.0054 (10) | −0.0211 (11) |
| C13 | 0.0827 (18) | 0.0276 (12) | 0.0526 (14) | −0.0028 (11) | 0.0208 (13) | −0.0029 (10) |
| O3—C5 | 1.364 (2) | C3—C2 | 1.479 (3) |
| O3—C10 | 1.427 (2) | C8—H8 | 0.9500 |
| O2—C4 | 1.368 (2) | C10—H10A | 0.9800 |
| O2—C3 | 1.425 (2) | C10—H10B | 0.9800 |
| O1—C2 | 1.430 (2) | C10—H10C | 0.9800 |
| O1—C1 | 1.435 (2) | C11—H11 | 0.9500 |
| C5—C6 | 1.377 (2) | C11—C12 | 1.315 (3) |
| C5—C4 | 1.408 (2) | C2—H2 | 1.0000 |
| C6—H6 | 0.9500 | C2—C1 | 1.448 (3) |
| C6—C7 | 1.403 (2) | C12—H12 | 0.9500 |
| C4—C9 | 1.377 (2) | C12—C13 | 1.495 (3) |
| C7—C8 | 1.382 (3) | C1—H1A | 0.9900 |
| C7—C11 | 1.474 (3) | C1—H1B | 0.9900 |
| C9—H9 | 0.9500 | C13—H13A | 0.9800 |
| C9—C8 | 1.388 (3) | C13—H13B | 0.9800 |
| C3—H3A | 0.9900 | C13—H13C | 0.9800 |
| C3—H3B | 0.9900 | ||
| C5—O3—C10 | 117.72 (13) | O3—C10—H10C | 109.5 |
| C4—O2—C3 | 118.70 (14) | H10A—C10—H10B | 109.5 |
| C2—O1—C1 | 60.72 (12) | H10A—C10—H10C | 109.5 |
| O3—C5—C6 | 125.24 (15) | H10B—C10—H10C | 109.5 |
| O3—C5—C4 | 114.77 (15) | C7—C11—H11 | 116.1 |
| C6—C5—C4 | 119.99 (16) | C12—C11—C7 | 127.7 (2) |
| C5—C6—H6 | 119.5 | C12—C11—H11 | 116.1 |
| C5—C6—C7 | 120.90 (17) | O1—C2—C3 | 116.11 (16) |
| C7—C6—H6 | 119.5 | O1—C2—H2 | 115.7 |
| O2—C4—C5 | 114.35 (15) | O1—C2—C1 | 59.82 (12) |
| O2—C4—C9 | 126.27 (16) | C3—C2—H2 | 115.7 |
| C9—C4—C5 | 119.38 (16) | C1—C2—C3 | 122.05 (19) |
| C6—C7—C11 | 121.60 (18) | C1—C2—H2 | 115.7 |
| C8—C7—C6 | 118.10 (17) | C11—C12—H12 | 117.2 |
| C8—C7—C11 | 120.29 (17) | C11—C12—C13 | 125.7 (2) |
| C4—C9—H9 | 120.0 | C13—C12—H12 | 117.2 |
| C4—C9—C8 | 119.97 (18) | O1—C1—C2 | 59.46 (12) |
| C8—C9—H9 | 120.0 | O1—C1—H1A | 117.8 |
| O2—C3—H3A | 110.5 | O1—C1—H1B | 117.8 |
| O2—C3—H3B | 110.5 | C2—C1—H1A | 117.8 |
| O2—C3—C2 | 106.23 (15) | C2—C1—H1B | 117.8 |
| H3A—C3—H3B | 108.7 | H1A—C1—H1B | 115.0 |
| C2—C3—H3A | 110.5 | C12—C13—H13A | 109.5 |
| C2—C3—H3B | 110.5 | C12—C13—H13B | 109.5 |
| C7—C8—C9 | 121.65 (17) | C12—C13—H13C | 109.5 |
| C7—C8—H8 | 119.2 | H13A—C13—H13B | 109.5 |
| C9—C8—H8 | 119.2 | H13A—C13—H13C | 109.5 |
| O3—C10—H10A | 109.5 | H13B—C13—H13C | 109.5 |
| O3—C10—H10B | 109.5 | ||
| O3—C5—C6—C7 | 179.86 (15) | C4—O2—C3—C2 | 167.73 (14) |
| O3—C5—C4—O2 | −0.3 (2) | C4—C5—C6—C7 | −0.3 (2) |
| O3—C5—C4—C9 | −179.96 (15) | C4—C9—C8—C7 | 0.0 (3) |
| O2—C4—C9—C8 | −179.64 (16) | C7—C11—C12—C13 | −179.97 (19) |
| O2—C3—C2—O1 | 78.43 (19) | C3—O2—C4—C5 | −173.56 (14) |
| O2—C3—C2—C1 | 147.72 (17) | C3—O2—C4—C9 | 6.1 (2) |
| C5—C6—C7—C8 | 0.2 (2) | C3—C2—C1—O1 | −103.7 (2) |
| C5—C6—C7—C11 | −179.63 (16) | C8—C7—C11—C12 | 178.9 (2) |
| C5—C4—C9—C8 | 0.0 (3) | C10—O3—C5—C6 | 0.2 (2) |
| C6—C5—C4—O2 | 179.83 (14) | C10—O3—C5—C4 | −179.68 (14) |
| C6—C5—C4—C9 | 0.2 (2) | C11—C7—C8—C9 | 179.78 (17) |
| C6—C7—C8—C9 | −0.1 (3) | C1—O1—C2—C3 | 113.5 (2) |
| C6—C7—C11—C12 | −1.2 (3) |