| Literature DB >> 36250113 |
Phillip L van der Peet1, Rohan D Joyce2, Holger Ott3, Sebastian M Marcuccio2, Jonathan M White1, Spencer J Williams1.
Abstract
The structure of the title compound, 2C18H19ClN4O·HCl or (CNO)2·HCl (C36H39Cl3N8O2), at 100 K has tetra-gonal (I4/m) symmetry. The dihedral angle between the benzene rings of the fused ring system of the CNO mol-ecule is 40.08 (6)° and the equivalent angle between the seven-membered ring and its pendant N-oxide ring is 31.14 (7)°. The structure contains a very strong, symmetrical O-H⋯O hydrogen bond [O⋯O = 2.434 (2) Å] between two equivalent R 3N+-O- moieties, which share a proton lying on a crystallographic twofold rotation axis. These units then form a (CNO)4·(HCl)2 ring by way of two equivalent N-H⋯Cl hydrogen bonds (Cl- site symmetry m). These rings are catenated into infinite chains propagating along the c-axis direction by way of shape complementarity and directional C-H⋯N and C-H⋯π inter-actions. © Peet et al. 2022.Entities:
Keywords: crystal structure; hydrogen bonding; hydrogen-bonding catenation
Year: 2022 PMID: 36250113 PMCID: PMC9535830 DOI: 10.1107/S2056989022009306
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (CNO)2·HCl showing 50% displacement ellipsoids with C-bound H atoms omitted for clarity. The unlabelled atoms are generated by the symmetry operation −x, 1 − y, z.
Figure 2The cyclic tetramer (CNO)4·(HCl)2 templated by N—H⋯Cl hydrogen-bonding interactions.
Selected torsion angles (°)
| C8—N1—C1—C2 | 55.7 (2) | C7—N2—C9—C8 | 33.5 (2) |
| C9—N2—C7—C2 | 3.2 (2) | C1—N1—C8—C9 | −54.0 (2) |
| N1—C1—C2—C7 | 0.9 (2) | N2—C9—C8—N1 | −4.9 (2) |
| N2—C7—C2—C1 | −35.2 (2) |
Figure 3Partial structure of (CNO)2·HCl catenated chain showing two members of the poly[n]catenane; adjacent links in the chain are related by a 42 screw axis.
Figure 4Partial structure of (CNO)2·HCl catenated chain showing three members of the poly[n]catenane; adjacent links in the chain are related by a 42 screw axis.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1—H1 | 1.22 (1) | 1.22 (1) | 2.434 (2) | 179 (4) |
| N1—H1⋯Cl2 | 0.86 (2) | 2.46 (2) | 3.3259 (14) | 176 (2) |
| C15—H15 | 0.97 | 2.64 | 3.2598 (19) | 122 |
| C15—H15 | 0.97 | 2.51 | 3.416 (2) | 156 |
| C15—H15 | 0.97 | 2.91 | 3.8431 (17) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 5C—H⋯N and C—H⋯π interactions at the interface of neighbouring tetrameric (CNO)4·(HCl) rings in the poly[n]catenane.
Figure 6Overlay of powder patterns of the initial precipitate of (CNO)·HCl and the recrystallized material (CNO)2·HCl.
Experimental details
| Crystal data | |
| Chemical formula | 2C18H19ClN4O·HCl |
|
| 722.10 |
| Crystal system, space group | Tetragonal, |
| Temperature (K) | 100 |
|
| 17.305 (2), 26.040 (5) |
|
| 7798 (3) |
|
| 8 |
| Radiation type | Synchrotron, λ = 0.710757 Å |
| μ (mm−1) | 0.28 |
| Crystal size (mm) | 0.06 × 0.05 × 0.04 |
| Data collection | |
| Diffractometer | ADSC Quantum 210r |
| No. of measured, independent and observed [ | 66433, 5901, 5096 |
|
| 0.049 |
| (sin θ/λ)max (Å−1) | 0.741 |
| Refinement | |
|
| 0.049, 0.138, 1.03 |
| No. of reflections | 5901 |
| No. of parameters | 231 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.81, −0.49 |
Computer programs: AS QEGUI, XDS (Kabsch, 1993 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2016/6 (Sheldrick, 2015b ▸), Mercury (Macrae et al., 2020 ▸) and WinGX (Farrugia, 2012 ▸).
| 2C18H19ClN4O·HCl | |
| Synchrotron radiation, λ = 0.710757 Å | |
| Tetragonal, | Cell parameters from 5908 reflections |
| θ = 1.4–31.8° | |
| µ = 0.28 mm−1 | |
| Block, yellow | |
| 0.06 × 0.05 × 0.04 mm |
| ADSC Quantum 210r diffractometer | 5096 reflections with |
| Radiation source: MX1 Beamline Australian Synchrotron | |
| Silicon Double Crystal monochromator | θmax = 31.8°, θmin = 1.4° |
| ω Scan scans | |
| 66433 measured reflections | |
| 5901 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.81 e Å−3 | |
| 5901 reflections | Δρmin = −0.49 e Å−3 |
| 231 parameters | Extinction correction: SHELXL2016/6 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0069 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cl1 | 0.13932 (3) | 0.04426 (2) | 0.37292 (2) | 0.03680 (13) | |
| Cl2 | 0.16534 (4) | 0.44691 (3) | 0.500000 | 0.03563 (15) | |
| O1 | 0.02559 (6) | 0.43450 (7) | 0.13599 (5) | 0.0285 (2) | |
| N3 | 0.17304 (7) | 0.39022 (7) | 0.21729 (5) | 0.0225 (2) | |
| N2 | 0.15846 (7) | 0.30145 (7) | 0.28157 (5) | 0.0228 (2) | |
| N1 | 0.18161 (8) | 0.38441 (8) | 0.37970 (5) | 0.0261 (3) | |
| N4 | 0.10378 (8) | 0.43810 (8) | 0.12165 (5) | 0.0248 (3) | |
| C1 | 0.23713 (9) | 0.42470 (8) | 0.35074 (6) | 0.0242 (3) | |
| C7 | 0.18814 (8) | 0.36630 (8) | 0.26780 (5) | 0.0216 (3) | |
| C2 | 0.24220 (8) | 0.41696 (8) | 0.29712 (6) | 0.0228 (3) | |
| C10 | 0.15645 (9) | 0.18517 (9) | 0.32919 (6) | 0.0252 (3) | |
| H10 | 0.150809 | 0.159189 | 0.298148 | 0.030* | |
| C14 | 0.14157 (9) | 0.46872 (8) | 0.21112 (6) | 0.0239 (3) | |
| H14A | 0.170572 | 0.504443 | 0.232387 | 0.029* | |
| H14B | 0.088144 | 0.469610 | 0.222369 | 0.029* | |
| C9 | 0.16811 (8) | 0.26540 (8) | 0.32932 (6) | 0.0228 (3) | |
| C16 | 0.13708 (9) | 0.35868 (9) | 0.12884 (6) | 0.0254 (3) | |
| H16A | 0.190585 | 0.358444 | 0.117741 | 0.030* | |
| H16B | 0.108830 | 0.322118 | 0.107741 | 0.030* | |
| C15 | 0.14617 (9) | 0.49399 (8) | 0.15559 (6) | 0.0245 (3) | |
| H15A | 0.123725 | 0.545067 | 0.152003 | 0.029* | |
| H15B | 0.199875 | 0.496810 | 0.145089 | 0.029* | |
| C3 | 0.29823 (9) | 0.46033 (9) | 0.27067 (6) | 0.0256 (3) | |
| H3 | 0.302804 | 0.454729 | 0.235282 | 0.031* | |
| C11 | 0.15328 (9) | 0.14442 (9) | 0.37477 (6) | 0.0291 (3) | |
| C5 | 0.33991 (10) | 0.52005 (10) | 0.34901 (7) | 0.0317 (3) | |
| H5 | 0.371497 | 0.554918 | 0.366272 | 0.038* | |
| C8 | 0.17647 (9) | 0.30343 (9) | 0.37683 (6) | 0.0253 (3) | |
| C17 | 0.13260 (9) | 0.33393 (8) | 0.18470 (5) | 0.0237 (3) | |
| H17A | 0.078931 | 0.330314 | 0.195175 | 0.028* | |
| H17B | 0.156037 | 0.283374 | 0.188721 | 0.028* | |
| C6 | 0.28604 (9) | 0.47695 (10) | 0.37606 (6) | 0.0291 (3) | |
| H6 | 0.282259 | 0.482756 | 0.411475 | 0.035* | |
| C4 | 0.34685 (9) | 0.51128 (9) | 0.29616 (7) | 0.0294 (3) | |
| H4 | 0.383731 | 0.539293 | 0.278039 | 0.035* | |
| C13 | 0.17144 (12) | 0.26047 (10) | 0.42216 (6) | 0.0352 (4) | |
| H13 | 0.176053 | 0.285737 | 0.453531 | 0.042* | |
| C12 | 0.15973 (11) | 0.18114 (10) | 0.42162 (7) | 0.0361 (4) | |
| H12 | 0.156323 | 0.153376 | 0.452117 | 0.043* | |
| C18 | 0.10927 (11) | 0.46237 (11) | 0.06669 (6) | 0.0345 (4) | |
| H18A | 0.079973 | 0.427372 | 0.045739 | 0.052* | |
| H18B | 0.162386 | 0.461630 | 0.056060 | 0.052* | |
| H18C | 0.088990 | 0.513702 | 0.062973 | 0.052* | |
| H1 | 0.1789 (13) | 0.3988 (13) | 0.4114 (9) | 0.037 (6)* | |
| H1A | 0.000000 | 0.500000 | 0.1357 (17) | 0.077 (14)* |
| Cl1 | 0.0421 (2) | 0.02417 (19) | 0.0442 (2) | 0.00136 (15) | 0.01026 (17) | 0.00663 (15) |
| Cl2 | 0.0513 (4) | 0.0331 (3) | 0.0224 (2) | 0.0004 (2) | 0.000 | 0.000 |
| O1 | 0.0225 (5) | 0.0313 (6) | 0.0318 (6) | −0.0003 (4) | −0.0012 (4) | 0.0007 (4) |
| N3 | 0.0265 (6) | 0.0200 (5) | 0.0210 (5) | −0.0002 (4) | −0.0015 (4) | −0.0017 (4) |
| N2 | 0.0234 (6) | 0.0225 (5) | 0.0224 (5) | 0.0017 (4) | 0.0001 (4) | −0.0013 (4) |
| N1 | 0.0321 (7) | 0.0252 (6) | 0.0211 (6) | 0.0006 (5) | 0.0007 (5) | −0.0034 (4) |
| N4 | 0.0263 (6) | 0.0271 (6) | 0.0210 (6) | −0.0012 (5) | 0.0007 (4) | −0.0003 (4) |
| C1 | 0.0234 (6) | 0.0237 (6) | 0.0256 (7) | 0.0024 (5) | −0.0024 (5) | −0.0013 (5) |
| C7 | 0.0216 (6) | 0.0219 (6) | 0.0214 (6) | 0.0025 (5) | 0.0000 (5) | −0.0024 (5) |
| C2 | 0.0219 (6) | 0.0214 (6) | 0.0249 (6) | 0.0018 (5) | −0.0018 (5) | −0.0015 (5) |
| C10 | 0.0234 (6) | 0.0241 (7) | 0.0282 (7) | 0.0020 (5) | 0.0025 (5) | 0.0007 (5) |
| C14 | 0.0272 (7) | 0.0211 (6) | 0.0233 (6) | 0.0015 (5) | −0.0014 (5) | −0.0014 (5) |
| C9 | 0.0203 (6) | 0.0236 (6) | 0.0246 (6) | 0.0021 (5) | 0.0006 (5) | 0.0006 (5) |
| C16 | 0.0286 (7) | 0.0256 (7) | 0.0220 (6) | −0.0001 (6) | 0.0009 (5) | −0.0028 (5) |
| C15 | 0.0264 (7) | 0.0228 (6) | 0.0241 (6) | −0.0020 (5) | −0.0011 (5) | 0.0003 (5) |
| C3 | 0.0239 (6) | 0.0236 (6) | 0.0293 (7) | 0.0010 (5) | 0.0000 (5) | −0.0010 (5) |
| C11 | 0.0286 (7) | 0.0238 (7) | 0.0349 (8) | 0.0030 (6) | 0.0051 (6) | 0.0046 (6) |
| C5 | 0.0275 (7) | 0.0284 (7) | 0.0392 (9) | −0.0019 (6) | −0.0071 (6) | −0.0053 (6) |
| C8 | 0.0258 (7) | 0.0257 (7) | 0.0245 (7) | 0.0022 (5) | −0.0009 (5) | 0.0001 (5) |
| C17 | 0.0275 (7) | 0.0230 (6) | 0.0205 (6) | −0.0010 (5) | −0.0005 (5) | −0.0027 (5) |
| C6 | 0.0294 (7) | 0.0304 (7) | 0.0274 (7) | 0.0016 (6) | −0.0056 (6) | −0.0055 (6) |
| C4 | 0.0233 (7) | 0.0262 (7) | 0.0387 (8) | −0.0019 (5) | −0.0006 (6) | −0.0014 (6) |
| C13 | 0.0494 (10) | 0.0340 (8) | 0.0224 (7) | 0.0029 (7) | −0.0001 (7) | 0.0013 (6) |
| C12 | 0.0477 (10) | 0.0327 (8) | 0.0279 (8) | 0.0034 (7) | 0.0032 (7) | 0.0070 (6) |
| C18 | 0.0464 (9) | 0.0368 (8) | 0.0203 (7) | −0.0016 (7) | 0.0000 (6) | 0.0033 (6) |
| Cl1—C11 | 1.7506 (17) | C9—C8 | 1.409 (2) |
| O1—N4 | 1.4051 (17) | C16—C17 | 1.518 (2) |
| O1—H1A | 1.2169 (12) | C16—H16A | 0.9700 |
| N3—C7 | 1.4035 (18) | C16—H16B | 0.9700 |
| N3—C17 | 1.4692 (18) | C15—H15A | 0.9700 |
| N3—C14 | 1.4723 (18) | C15—H15B | 0.9700 |
| N2—C7 | 1.2852 (19) | C3—C4 | 1.388 (2) |
| N2—C9 | 1.4012 (19) | C3—H3 | 0.9300 |
| N1—C1 | 1.406 (2) | C11—C12 | 1.380 (2) |
| N1—C8 | 1.406 (2) | C5—C6 | 1.386 (2) |
| N1—H1 | 0.86 (2) | C5—C4 | 1.390 (2) |
| N4—C18 | 1.494 (2) | C5—H5 | 0.9300 |
| N4—C15 | 1.5016 (19) | C8—C13 | 1.398 (2) |
| N4—C16 | 1.502 (2) | C17—H17A | 0.9700 |
| C1—C6 | 1.403 (2) | C17—H17B | 0.9700 |
| C1—C2 | 1.405 (2) | C6—H6 | 0.9300 |
| C7—C2 | 1.492 (2) | C4—H4 | 0.9300 |
| C2—C3 | 1.406 (2) | C13—C12 | 1.388 (3) |
| C10—C11 | 1.382 (2) | C13—H13 | 0.9300 |
| C10—C9 | 1.403 (2) | C12—H12 | 0.9300 |
| C10—H10 | 0.9300 | C18—H18A | 0.9600 |
| C14—C15 | 1.513 (2) | C18—H18B | 0.9600 |
| C14—H14A | 0.9700 | C18—H18C | 0.9600 |
| C14—H14B | 0.9700 | ||
| N4—O1—H1A | 107.9 (6) | N4—C15—H15A | 109.5 |
| C7—N3—C17 | 115.75 (12) | C14—C15—H15A | 109.5 |
| C7—N3—C14 | 116.31 (11) | N4—C15—H15B | 109.5 |
| C17—N3—C14 | 111.87 (11) | C14—C15—H15B | 109.5 |
| C7—N2—C9 | 126.07 (13) | H15A—C15—H15B | 108.1 |
| C1—N1—C8 | 120.58 (13) | C4—C3—C2 | 121.53 (15) |
| C1—N1—H1 | 114.0 (15) | C4—C3—H3 | 119.2 |
| C8—N1—H1 | 109.5 (15) | C2—C3—H3 | 119.2 |
| O1—N4—C18 | 109.17 (12) | C12—C11—C10 | 121.41 (15) |
| O1—N4—C15 | 110.03 (11) | C12—C11—Cl1 | 119.43 (13) |
| C18—N4—C15 | 110.59 (12) | C10—C11—Cl1 | 119.16 (13) |
| O1—N4—C16 | 107.20 (11) | C6—C5—C4 | 120.17 (15) |
| C18—N4—C16 | 110.61 (12) | C6—C5—H5 | 119.9 |
| C15—N4—C16 | 109.18 (12) | C4—C5—H5 | 119.9 |
| C6—C1—C2 | 119.37 (14) | C13—C8—N1 | 119.28 (14) |
| C6—C1—N1 | 118.67 (14) | C13—C8—C9 | 119.13 (15) |
| C2—C1—N1 | 121.88 (13) | N1—C8—C9 | 121.24 (13) |
| N2—C7—N3 | 116.40 (13) | N3—C17—C16 | 110.00 (12) |
| N2—C7—C2 | 128.37 (13) | N3—C17—H17A | 109.7 |
| N3—C7—C2 | 115.03 (12) | C16—C17—H17A | 109.7 |
| C1—C2—C3 | 118.60 (14) | N3—C17—H17B | 109.7 |
| C1—C2—C7 | 121.68 (13) | C16—C17—H17B | 109.7 |
| C3—C2—C7 | 119.68 (13) | H17A—C17—H17B | 108.2 |
| C11—C10—C9 | 120.58 (14) | C5—C6—C1 | 120.92 (15) |
| C11—C10—H10 | 119.7 | C5—C6—H6 | 119.5 |
| C9—C10—H10 | 119.7 | C1—C6—H6 | 119.5 |
| N3—C14—C15 | 110.58 (12) | C3—C4—C5 | 119.38 (15) |
| N3—C14—H14A | 109.5 | C3—C4—H4 | 120.3 |
| C15—C14—H14A | 109.5 | C5—C4—H4 | 120.3 |
| N3—C14—H14B | 109.5 | C12—C13—C8 | 121.79 (16) |
| C15—C14—H14B | 109.5 | C12—C13—H13 | 119.1 |
| H14A—C14—H14B | 108.1 | C8—C13—H13 | 119.1 |
| N2—C9—C10 | 114.92 (13) | C11—C12—C13 | 118.44 (15) |
| N2—C9—C8 | 125.70 (13) | C11—C12—H12 | 120.8 |
| C10—C9—C8 | 118.63 (13) | C13—C12—H12 | 120.8 |
| N4—C16—C17 | 110.97 (12) | N4—C18—H18A | 109.5 |
| N4—C16—H16A | 109.4 | N4—C18—H18B | 109.5 |
| C17—C16—H16A | 109.4 | H18A—C18—H18B | 109.5 |
| N4—C16—H16B | 109.4 | N4—C18—H18C | 109.5 |
| C17—C16—H16B | 109.4 | H18A—C18—H18C | 109.5 |
| H16A—C16—H16B | 108.0 | H18B—C18—H18C | 109.5 |
| N4—C15—C14 | 110.53 (12) | ||
| C8—N1—C1—C6 | −127.64 (15) | C18—N4—C15—C14 | −179.16 (13) |
| C8—N1—C1—C2 | 55.7 (2) | C16—N4—C15—C14 | −57.23 (15) |
| C9—N2—C7—N3 | 177.72 (13) | N3—C14—C15—N4 | 57.38 (16) |
| C9—N2—C7—C2 | 3.2 (2) | C1—C2—C3—C4 | −1.4 (2) |
| C17—N3—C7—N2 | −6.69 (19) | C7—C2—C3—C4 | 176.48 (14) |
| C14—N3—C7—N2 | 127.72 (14) | C9—C10—C11—C12 | 1.4 (2) |
| C17—N3—C7—C2 | 168.54 (12) | C9—C10—C11—Cl1 | −179.55 (11) |
| C14—N3—C7—C2 | −57.05 (17) | C1—N1—C8—C13 | 132.81 (16) |
| C6—C1—C2—C3 | 2.0 (2) | C1—N1—C8—C9 | −54.0 (2) |
| N1—C1—C2—C3 | 178.72 (13) | N2—C9—C8—C13 | 168.37 (15) |
| C6—C1—C2—C7 | −175.82 (13) | C10—C9—C8—C13 | −1.2 (2) |
| N1—C1—C2—C7 | 0.9 (2) | N2—C9—C8—N1 | −4.9 (2) |
| N2—C7—C2—C1 | −35.2 (2) | C10—C9—C8—N1 | −174.45 (14) |
| N3—C7—C2—C1 | 150.21 (14) | C7—N3—C17—C16 | −166.50 (12) |
| N2—C7—C2—C3 | 146.92 (15) | C14—N3—C17—C16 | 57.13 (16) |
| N3—C7—C2—C3 | −27.63 (19) | N4—C16—C17—N3 | −57.28 (16) |
| C7—N3—C14—C15 | 166.35 (12) | C4—C5—C6—C1 | −0.8 (2) |
| C17—N3—C14—C15 | −57.55 (16) | C2—C1—C6—C5 | −1.0 (2) |
| C7—N2—C9—C10 | −156.61 (14) | N1—C1—C6—C5 | −177.76 (15) |
| C7—N2—C9—C8 | 33.5 (2) | C2—C3—C4—C5 | −0.3 (2) |
| C11—C10—C9—N2 | −170.69 (14) | C6—C5—C4—C3 | 1.4 (2) |
| C11—C10—C9—C8 | 0.0 (2) | N1—C8—C13—C12 | 174.49 (17) |
| O1—N4—C16—C17 | −61.75 (15) | C9—C8—C13—C12 | 1.1 (3) |
| C18—N4—C16—C17 | 179.32 (13) | C10—C11—C12—C13 | −1.5 (3) |
| C15—N4—C16—C17 | 57.41 (16) | Cl1—C11—C12—C13 | 179.46 (14) |
| O1—N4—C15—C14 | 60.16 (15) | C8—C13—C12—C11 | 0.2 (3) |
| H··· | ||||
| O1—H1 | 1.22 (1) | 1.22 (1) | 2.434 (2) | 179 (4) |
| N1—H1···Cl2 | 0.86 (2) | 2.46 (2) | 3.3259 (14) | 176 (2) |
| C15—H15 | 0.97 | 2.64 | 3.2598 (19) | 122 |
| C15—H15 | 0.97 | 2.51 | 3.416 (2) | 156 |
| C15—H15 | 0.97 | 2.91 | 3.8431 (17) | 162 |