| Literature DB >> 36250092 |
Yuhan Deng1, Shuang Liu1, Ziyao Wang1, Yuxin Wang1, Yong Jiang2,3, Baohua Liu1.
Abstract
Background: In-hospital mortality, prolonged length of stay (LOS), and 30-day readmission are common outcomes in the intensive care unit (ICU). Traditional scoring systems and machine learning models for predicting these outcomes usually ignore the characteristics of ICU data, which are time-series forms. We aimed to use time-series deep learning models with the selective combination of three widely used scoring systems to predict these outcomes. Materials and methods: A retrospective cohort study was conducted on 40,083 patients in ICU from the Medical Information Mart for Intensive Care-IV (MIMIC-IV) database. Three deep learning models, namely, recurrent neural network (RNN), gated recurrent unit (GRU), and long short-term memory (LSTM) with attention mechanisms, were trained for the prediction of in-hospital mortality, prolonged LOS, and 30-day readmission with variables collected during the initial 24 h after ICU admission or the last 24 h before discharge. The inclusion of variables was based on three widely used scoring systems, namely, APACHE II, SOFA, and SAPS II, and the predictors consisted of time-series vital signs, laboratory tests, medication, and procedures. The patients were randomly divided into a training set (80%) and a test set (20%), which were used for model development and model evaluation, respectively. The area under the receiver operating characteristic curve (AUC), sensitivity, specificity, and Brier scores were used to evaluate model performance. Variable significance was identified through attention mechanisms.Entities:
Keywords: deep learning; intensive care unit (ICU); length of stay; mortality; prognostic prediction; readmission
Year: 2022 PMID: 36250092 PMCID: PMC9554013 DOI: 10.3389/fmed.2022.933037
Source DB: PubMed Journal: Front Med (Lausanne) ISSN: 2296-858X
FIGURE 1Model diagram of a single cell. (A) RNN; (B) GRU; (C) LSTM.
FIGURE 2Flow chart depicting the inclusion of study participants.
Characteristics of study participants grouped by outcomes.
| Characteristic | Total | Outcome 1 | Outcome 2 | Total | Outcome 3 | ||||||
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| Death | Survival | PLOS | Non-PLOS | Readmission | Non-readmission | ||||||
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| 63.6 ± 16.1 | 68.5 ± 14.7 | 63.1 ± 16.2 |
| 63.7 ± 16.0 | 63.6 ± 16.2 | 0.444 | 63.1 ± 16.2 | 64.7 ± 15.4 | 62.9 ± 16.3 |
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| 0.412 | ||||||||
| Male | 23,096 (57.6) | 2,131 (54.6) | 20,965 (57.9) | . | 6,253 (56.6) | 16,843 (58.0) | 20,965 (57.9) | 2,498 (58.5) | 18,467 (57.9) | ||
| Female | 16,987 (42.4) | 1,772 (45.4) | 15,215 (42.1) | . | 4,785 (43.4) | 12,202 (42.0) | 15,215 (42.1) | 1,770 (41.5) | 13,445 (42.1) | ||
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| White | 26,768 (66.8) | 2,307 (59.1) | 24,461 (67.6) | . | 7,044 (63.8) | 19,724 (67.9) | 24,461 (67.6) | 2,998 (70.2) | 21,463 (67.3) | ||
| Black American | 3,540 (8.8) | 289 (7.4) | 3,251 (9.0) | . | 934 (8.5) | 2,606 (9.0) | 3,251 (9.0) | 394 (9.2) | 2,857 (9.0) | ||
| Asian | 1,178 (2.9) | 116 (3.0) | 1,062 (2.9) | 291 (2.6) | 887 (3.1) | 1,062 (2.9) | 125 (2.9) | 937 (2.9) | |||
| Hispanic | 1,423 (3.6) | 103 (2.6) | 1,320 (3.6) | 373 (3.4) | 1,050 (3.6) | 1,320 (3.6) | 138 (3.2) | 1,182 (3.7) | |||
| Others/Unknown | 7,174 (17.9) | 1,088 (27.9) | 6,086 (16.8) | 2,396 (21.7) | 4,778 (16.5) | 6,086 (16.8) | 613 (14.4) | 5,473 (17.2) | |||
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| Emergency room | 17,587 (43.9) | 2,024 (51.9) | 15,563 (43.0) | . | 4,862 (44.0) | 12,725 (43.8) | 15,563 (43.0) | 1,915 (44.9) | 13,648 (42.8) | ||
| Physician referral | 10,154 (25.3) | 412 (10.6) | 9,742 (26.9) | 2,073 (18.8) | 8,081 (27.8) | 9,742 (26.9) | 870 (20.4) | 8,872 (27.8) | |||
| Transfer from hospital | 9,946 (24.8) | 1,236 (31.7) | 8,710 (24.1) | . | 3,511 (31.8) | 6,435 (22.2) | 8,710 (24.1) | 1,213 (28.4) | 7,497 (23.5) | ||
| Others | 2,396 (6.0) | 231 (5.9) | 2,165 (6.0) | 592 (5.4) | 1,804 (6.2) | 2,165 (6.0) | 270 (6.3) | 1,895 (5.9) | |||
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| 4.1 ± 5.3 | 6.2 ± 6.8 | 3.9 ± 5.0 |
| 9.6 ± 7.6 | 2.0 ± 0.8 |
| 3.9 ± 5.0 | 5.3 ± 6.9 | 3.7 ± 4.7 |
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| Yes | 4,715 (11.8) | 776 (19.9) | 3,939 (10.9) | 1,234 (11.2) | 3,481 (12.0) | 3,939 (10.9) | 552 (12.9) | 3,387 (10.6) | |||
| No | 35,368 (88.2) | 3,127 (80.1) | 32,241 (89.1) | . | 9,804 (88.8) | 25,564 (88.0) | 32,241 (89.1) | 3,716 (87.1) | 28,525 (89.4) | ||
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| Yes | 1,278 (3.2) | 257 (6.6) | 1,021 (2.8) | 383 (3.5) | 895 (3.1) | 1,021 (2.8) | 165 (3.9) | 856 (2.7) | |||
| No | 38,805 (96.8) | 3,646 (93.4) | 35,159 (97.2) | . | 10,655 (96.5) | 28,150 (96.9) | 35,159 (97.2) | 4,103 (96.1) | 31,056 (97.3) | ||
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| 0.777 | 0.985 | 0.146 | ||||||||
| Yes | 47 (0.1) | 4 (0.1) | 43 (0.1) | 13 (0.1) | 34 (0.1) | 43 (0.1) | 2 (0.0) | 41 (0.1) | |||
| No | 40,036 (99.9) | 3,899 (99.9) | 36,137 (99.9) | . | 11,025 (99.9) | 29,011 (99.9) | 36,137 (99.9) | 4,266 (100) | 31,871 (99.9) | ||
PLOS, prolonged length of stay; non-PLOS, non-prolonged length of stay; AIDS, acquired immune deficiency syndrome. The bold font designates the statistically significant variables with p value less than 0.05.
FIGURE 3ROC curves of RNN, GRU, and LSTM. (A) Mortality prediction; (B) prolonged LOS prediction; (C) 30-day readmission prediction.
Model performance in predicting hospital mortality, PLOS, and 30-day readmission of patients in ICU.
| Performance | Mortality prediction | PLOS prediction | 30-day readmission prediction | ||||||
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| RNN | GRU | LSTM | RNN | GRU | LSTM | RNN | GRU | LSTM | |
| AUC | 0.862 ± 0.001 |
| 0.869 ± 0.002 | 0.761 ± 0.002 | 0.757 ± 0.011 |
| 0.625 ± 0.008 | 0.631 ± 0.011 |
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| Sensitivity | 0.787 ± 0.012 |
| 0.790 ± 0.020 | 0.651 ± 0.009 |
| 0.655 ± 0.027 | 0.658 ± 0.036 | 0.652 ± 0.083 |
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| Specificity |
| 0.782 ± 0.012 | 0.783 ± 0.017 |
| 0.741 ± 0.012 | 0.760 ± 0.024 |
| 0.541 ± 0.072 | 0.524 ± 0.061 |
| Brier Score |
| 0.087 ± 0.006 | 0.082 ± 0.010 |
| 0.204 ± 0.019 | 0.185 ± 0.014 | 0.105 ± 0.001 | 0.105 ± 0.002 |
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AUC, area under the curve; PLOS, prolonged length of stay; RNN, recurrent neural network; GRU, gated recurrent unit; LSTM, long short-term memory. The bold font represents the best score of the three models.
FIGURE 4Variable importance generated by mortality prediction models. (A) RNN; (B) GRU; (C) LSTM.
FIGURE 6Variable importance generated by 30-day readmission prediction models. (A) RNN; (B) GRU; (C) LSTM.