| Literature DB >> 36249789 |
Mena Abdelsayed1,2,3, Dana Page1, Peter C Ruben1.
Abstract
Background: Most therapeutics targeting cardiac voltage-gated sodium channels (Nav1.5) attenuate the sodium current (INa) conducted through the pore of the protein. Whereas these drugs may be beneficial for disease states associated with gain-of-function (GoF) in Nav1.5, few attempts have been made to therapeutically treat loss-of-function (LoF) conditions. The primary impediment to designing efficacious therapies for LoF is a tendency for drugs to occlude the Nav1.5 central pore. We hypothesized that molecular candidates with a high affinity for the fenestrations would potentially reduce pore block. Methods andEntities:
Keywords: ARumenamide; Brugada syndrome; Nav1.5; aliphaticity; aromaticity; fenestrations; loss-of-function
Year: 2022 PMID: 36249789 PMCID: PMC9554508 DOI: 10.3389/fphar.2022.976903
Source DB: PubMed Journal: Front Pharmacol ISSN: 1663-9812 Impact factor: 5.988
Chemical name and formula
| Name | Formula |
|---|---|
| AR-787 | N-(1H-benzimidazol-2-yl)-4-methyl-2-pyrrol-1-yl-thiazole-5-carboxamide |
| AR-138 | N-(4-ethylphenyl)-2-oxo-benzimidazole-5-sulfonamide |
| AR-051 | N-(2-furylmethyl)-2,3-dioxo-quinoxaline-6-carboxamide |
| AR-946 | N-(3-imidazol-1-ylpropyl)-2,3-dioxo-quinoxaline-6-carboxamide |
| AR-634 | N-(2-cyclohexen-1-ylethyl)-2,3-dioxo-quinoxaline-6-carboxamide |
| AR-058 | 6-(4-methylpiperazin-1-yl)sulfonylquinoxaline-2,3-dione |
| AR-674 | N-allyl-2-oxo-benzimidazole-5-sulfonamide |
| AR-591 | N-(m-tolyl)-2,3-dioxo-quinoxaline-6-sulfonamide |
| AR-133 | N-(3-ethylphenyl)-2-oxo-benzimidazole-5-sulfonamide |
| AR-538 | N-ethyl-N-(4-fluorophenyl)-2-oxo-benzimidazole-5-sulfonamide |
| AR-189 | N-[(2S)-2-(dimethylamino)-2-(2-furyl)ethyl]-2,3-dioxo-quinoxaline-6-carboxamide |
| AR-769 | N-[2-(4-methoxyphenyl)ethyl]-2-oxo-benzimidazole-5-sulfonamide |
| AR-949 | N-methyl-N-[(2-methyl-3-furyl)methyl]-2-oxo-benzimidazole-5-sulfonamide |
| AR-310 | 5-[2-[2-furylmethyl (methyl)amino]acetyl]benzimidazol-2-one |
| AR-847 | N-(1-methylpyrazol-3-yl)-2,3-dioxo-quinoxaline-6-sulfonamide |
| AR-792 | N-(2-chloro-4-methyl-phenyl)-2-oxo-benzimidazole-5-sulfonamide |
| AR-802 | N-(3-methoxyphenyl)-2-oxo-benzimidazole-5-sulfonamide |
| AR-807 | N-(2-ethylphenyl)-2-oxo-benzimidazole-5-sulfonamide |
| AR-811 | N-(4-fluoro-2-methyl-phenyl)-2-oxo-benzimidazole-5-sulfonamide |
| AR-812 | N-[(2-methoxyphenyl)methyl]-2-oxo-benzimidazole-5-sulfonamide |
FIGURE 1Docking ARumenamide. (AI, AII) display the virtual docking results for ARumenamide compounds screened against Nav1.5 -NavAb from the side and top-down views, respectively. The highest binding affinity mode is shown for the six ARumenamide compounds: AR-051; AR-189; AR-674; AR-802; AR-807; and AR-811. All these compounds have a favorable affinity to Domain III-IV fenestration (circled). The compounds are shown as spherical representations. (B) shows the chemical structure of the docked ARumenamide compounds. The common backbone is either squared (blue) if it contains a carboxamide or circled if it contains sulfonamide (red). The functional groups (non-squared and non-circled) are the key moieties and determinants of the ARumenamide’s efficacy.
Binding sites and affinities for compounds docked against rNav1.5
| Highest affinity binding mode (kcal/mol) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| DI-DII | DII-DIII | DIII-DIV | DIV-DI | Whole channel | ||||||
|
| −7.0 | VSD | −7.5 | VSD | −6.9 | OUT VES | −7.7 | FEN | −8.0 | DIV-DI FEN |
|
| −6.6 | VSD | −6.4 | VSD | −6.9 | VSD | −6.8 | FEN | −7.0 | DIV-DI FEN |
|
| −8.3 | VSD | −7.4 | OUT VES | −7.7 | FEN | −8.0 | FEN | −8.6 | DIV-DI FEN |
|
| −7.3 | VSD | −7.3 | VSD | −7.9 | VSD | −8.6 | FEN | −9.0 | DIV-DI FEN |
|
| −7.6 | VSD | −7.5 | VSD | −8.7 | FEN | −8.1 | FEN | −8.8 | DIV-DI FEN |
|
| −8.1 | VSD | −7.9 | VSD | −8.7 | FEN | −8.8 | FEN | −9.0 | DIV-DI FEN |
*VSD, Voltage-Sensing Domain.
*OUT VES, outer vestibule.
*INN VES, inner vestibule.
*FEN, fenestration.
FIGURE 2Peak INA and conductance. (AI-FI) show representative traces of peak INa in vehicle (black) and compound treatment at 50 µM (varied colors). (AII-FII) shows the voltage-dependence of conductance fit with a Boltzmann curve for vehicle (black) and compound treatment at 50 µM (varied colors). (G) shows a box-plot for compound-induced shifts in normalized peak INa (normalized to control) at −20 mV. Statistical significance is reported in Table 3.
Peak INA and Conductance.
| Treatment | Peak INa (−20 mV) | % INa block (−20 mV) | Conductance midpoint GV-V1/2 | Conductance slope GV-z | N |
|---|---|---|---|---|---|
|
| −0.95 ± 0.04 | 0.00 | −42.12 ± 3.00 | 5.47 ± 0.28 | 7 |
|
| −0.72 ± 0.06 | −24.21 | −45.58 ± 4.20 | 4.19 ± 0.42 | 4 |
|
| −0.59 ± 0.11* | −37.89* | −39.12 ± 1.76 | 3.40 ± 0.21* | 4 |
|
| −0.58 ± 0.10* | −38.95* | −40.47 ± 5.25 | 3.33 ± 0.32* | 3 |
|
| −1.00 ± 0.01 | 0.00 | −38.04 ± 1.57 | 5.13 ± 0.39 | 6 |
|
| −0.80 ± 0.06 | −20.00 | −38.44 ± 1.60 | 4.47 ± 0.39 | 6 |
|
| −0.63 ± 0.06* | −37.00* | −40.77 ± 3.17 | 3.79 ± 0.07 | 4 |
|
| −0.59 ± 0.06* | −41.00* | −40.62 ± 4.48 | 3.67 ± 0.15 | 3 |
|
| −1.00 ± 0.00 | 0.00 | −42.74 ± 0.92 | 6.61 ± 0.52 | 7 |
|
| -0.66 ± 0.04* | −34.00* | −47.63 ± 2.20 | 4.46 ± 0.23* | 6 |
|
| −0.58 ± 0.06* | −42.00* | −48.47 ± 1.63 | 3.87 ± 0.32* | 4 |
|
| −0.53 ± 0.07* | −47.00* | −46.11 ± 0.48 | 3.72 ± 0.15* | 3 |
|
| −0.97 ± 0.02 | 0.00 | −39.21 ± 1.63 | 5.21 ± 0.24 | 11 |
|
| −0.75 ± 0.05 | −22.68 | −41.23 ± 1.87 | 4.51 ± 0.19 | 8 |
|
| −0.72 ± 0.06* | −25.77* | −42.19 ± 3.27 | 4.15 ± 0.27 | 6 |
|
| −0.60 ± 0.26* | −38.14* | −36.61 ± 3.15 | 3.66 ± 0.79* | 3 |
|
| −0.98 ± 0.01 | 0.00 | −42.14 ± 0.81 | 5.64 ± 0.48 | 6 |
|
| −0.76 ± 0.13 | −22.45 | −43.56 ± 2.51 | 4.54 ± 0.47 | 5 |
|
| −0.58 ± 0.10* | −40.82* | −44.22 ± 2.13 | 3.38 ± 0.32 | 4 |
|
| −0.25 ± 0.01* | −74.49* | −40.48 ± 0.01 | 2.60 ± 0.01* | 3 |
|
| −0.97 ± 0.01 | 0.00 | −38.70 ± 1.37 | 5.52 ± 0.28 | 17 |
|
| −0.74 ± 0.06 | −23.71 | −42.72 ± 2.57 | 4.56 ± 0.45 | 7 |
|
| −0.85 ± 0.08 | −12.37 | −42.15 ± 2.97 | 4.57 ± 0.54 | 6 |
|
| −0.73 ± 0.04 | −24.74 | −43.95 ± 1.89 | 4.20 ± 0.42 | 6 |
*p < 0.05 vs. 0 µM (AR, compound).
FIGURE 3Dose-Response and current-voltage relationships. A dose-response curve was fitted to the compound concentrations for peak INa block at –20 mV, generating hill curves shown at the top of the figure. Parameters from the Hill function curve are reported in Table 4. (A-F) show the current-voltage relationship for vehicle (black) and compound treatment between 0–100 μMs (varied colors). Statistical significance is reported in Table 3.
Hill function parameters for peak INA and use-dependence block.
| Peak INa block (−20 mV) | Use-dependence Block (%) | |||
|---|---|---|---|---|
| Rate | IC50 (µM) | Rate | IC50 (µM) | |
|
| 1.70 | 7.61 | 0.15 | 0.00149 |
|
| 1.06 | 12.56 | 0.09 | 0.00001 |
|
| 0.24 | 6.45 | 0.53 | 245.78 |
|
| 0.39 | 34.63 | 4.16 | 7.61 |
|
| 14.37 | 9.86 | 0.57 | 2199.30 |
|
| 16.06 | 0.93 | 0.34 | 101.98 |
FIGURE 4Fast inactivation onset. Representative traces are shown for vehicle (black) and compound treatment (varied colors) at –20 mV. The bar graph displays the effects of the compound (50 μM) on the fast inactivation time constant (τ in milliseconds) at –30 mV, –10 mV, and +10 mV. Statistical significance is reported in Table 5.
Fast inactivation onset.
| Treatment | FI -50 mV (ms) | FI -30 mV (ms) | FI -10 mV (ms) | FI +10 mV (ms) | N |
|---|---|---|---|---|---|
|
| 2.45 ± 0.30 | 0.68 ± 0.07 | 0.39 ± 0.06 | 0.26 ± 0.05 | 7 |
|
| 1.70 ± 0.33 | 0.71 ± 0.12 | 0.39 ± 0.06 | 0.25 ± 0.05 | 4 |
|
| 1.79 ± 0.15 | 0.94 ± 0.10 | 0.58 ± 0.08 | 0.34 ± 0.06 | 4 |
|
| 1.92 ± 0.38 | 1.05 ± 0.21* | 0.60 ± 0.13 | 0.41 ± 0.11 | 3 |
|
| 3.26 ± 0.96 | 0.54 ± 0.08 | 0.27 ± 0.03 | 0.19 ± 0.02 | 6 |
|
| 2.98 ± 0.84 | 0.63 ± 0.07 | 0.33 ± 0.03 | 0.23 ± 0.02 | 6 |
|
| 2.18 ± 0.70 | 0.69 ± 0.11 | 0.37 ± 0.05 | 0.25 ± 0.03 | 4 |
|
| 2.17 ± 0.73 | 0.69 ± 0.17 | 0.37 ± 0.09 | 0.26 ± 0.07 | 3 |
|
| 1.82 ± 0.23 | 0.48 ± 0.07 | 0.29 ± 0.05 | 0.21 ± 0.04 | 7 |
|
| 1.32 ± 0.24 | 0.54 ± 0.09 | 0.31 ± 0.04 | 0.21 ± 0.03 | 6 |
|
| 1.46 ± 0.09 | 0.63 ± 0.08 | 0.35 ± 0.04 | 0.25 ± 0.03 | 4 |
|
| 1.61 ± 0.18 | 0.72 ± 0.04 | 0.40 ± 0.03 | 0.26 ± 0.02 | 3 |
|
| 2.24 ± 0.46 | 0.54 ± 0.05 | 0.29 ± 0.02 | 0.20 ± 0.02 | 12 |
|
| 1.67 ± 0.21 | 0.70 ± 0.14 | 0.40 ± 0.08 | 0.26 ± 0.04 | 8 |
|
| 1.97 ± 0.29 | 0.75 ± 0.07* | 0.40 ± 0.03 | 0.26 ± 0.02 | 7 |
|
| 1.71 ± 0.22 | 0.76 ± 0.09* | 0.39 ± 0.02 | 0.23 ± 0.03 | 4 |
|
| 1.74 ± 0.31 | 0.45 ± 0.05 | 0.27 ± 0.03 | 0.20 ± 0.02 | 6 |
|
| 1.37 ± 0.31 | 0.66 ± 0.09 | 0.41 ± 0.07 | 0.31 ± 0.06* | 5 |
|
| 1.88 ± 0.27 | 1.02 ± 0.13* | 0.64 ± 0.08* | 0.39 ± 0.02* | 4 |
|
| 1.82 ± 0.00 | 0.96 ± 0.01* | 0.66 ± 0.01* | 0.49 ± 0.01* | 3 |
|
| 2.67 ± 0.38 | 0.52 ± 0.04 | 0.27 ± 0.02 | 0.19 ± 0.02 | 17 |
|
| 2.12 ± 0.34 | 0.66 ± 0.04 | 0.37 ± 0.03 | 0.27 ± 0.03 | 7 |
|
| 1.75 ± 0.34 | 0.63 ± 0.05 | 0.37 ± 0.03 | 0.25 ± 0.02 | 8 |
|
| 1.79 ± 0.20 | 0.81 ± 0.12* | 0.45 ± 0.07* | 0.28 ± 0.04* | 6 |
*p < 0.05 vs. 0 µM (AR, compound).
FIGURE 5Use-Dependence. Nav1.5 use-dependence is shown for vehicle (black) and compound treatment (varied colors). A dose-response curve was fitted to the compound concentrations for use-dependence (%), generating hill curves shown at the bottom of the figure. Statistical significance is reported in Table 6.
Use-dependence.
| Treatment | y0 | t1 (s) | t2 (s) | N |
|---|---|---|---|---|
|
| 0.83 ± 0.04 | 2.25 ± 0.78 | 10.30 ± 1.01 | 12 |
|
| 0.72 ± 0.06 | 0.38 ± 0.09 | 7.21 ± 1.73 | 7 |
|
| 0.79 ± 0.04 | 0.86 ± 0.30 | 10.76 ± 3.05 | 5 |
|
| 0.72 ± 0.03 | 0.39 ± 0.09 | 9.40 ± 3.01 | 4 |
|
| 0.87 ± 0.02 | 0.84 ± 0.19 | 13.53 ± 4.20 | 7 |
|
| 0.77 ± 0.02 | 2.52 ± 2.01 | 9.45 ± 2.73 | 6 |
|
| 0.69 ± 0.06* | 0.65 ± 0.13 | 12.48 ± 1.70 | 5 |
|
| 0.63 ± 0.06* | 0.36 ± 0.02 | 11.66 ± 3.44 | 3 |
|
| 0.84 ± 0.05 | 1.65 ± 0.47 | 14.57 ± 3.96 | 8 |
|
| 0.52 ± 0.08* | 5.27 ± 4.29 | 22.38 ± 3.84 | 7 |
|
| 0.63 ± 0.05* | 0.52 ± 0.15 | 5.13 ± 0.52 | 2 |
|
| 0.68 ± 0.08* | 1.20 ± 0.74 | 10.20 ± 6.21 | 3 |
|
| 0.84 ± 0.02 | 1.03 ± 0.27 | 8.01 ± 1.21 | 15 |
|
| 0.74 ± 0.05 | 1.74 ± 0.76 | 14.81 ± 3.14 | 10 |
|
| 0.69 ± 0.06 | 0.87 ± 0.25 | 18.67 ± 5.92 | 9 |
|
| 0.72 ± 0.08 | 0.44 ± 0.10 | 9.85 ± 5.43 | 3 |
|
| 0.90 ± 0.02 | 4.22 ± 1.42 | 22.28 ± 6.28 | 8 |
|
| 0.81 ± 0.03 | 2.25 ± 1.64 | 17.61 ± 5.07 | 6 |
|
| 0.76 ± 0.05 | 1.44 ± 0.92 | 18.07 ± 4.82 | 5 |
|
| 0.66 ± 0.11 | 0.39 ± 0.15 | 13.14 ± 1.02 | 2 |
|
| 0.86 ± 0.02 | 2.72 ± 1.02 | 18.17 ± 3.90 | 16 |
|
| 0.79 ± 0.05 | 1.48 ± 0.44 | 22.35 ± 8.39 | 7 |
|
| 0.78 ± 0.05 | 7.34 ± 6.79 | 21.85 ± 6.49 | 7 |
|
| 0.74 ± 0.03 | 0.57 ± 0.18 | 11.61 ± 5.38 | 5 |
*p < 0.05 vs. 0 µM (AR, compound).
FIGURE 6Effects of AR-802 and AR-811 on E1784K. (AI-III) show representative traces for peak INa in vehicle (black) and compound treatment (varied colors, 10 µM) in E1784K. (BI-III) show representative traces emphasizing the deceleration in fast inactivation onset kinetics caused by AR-802 and AR-811 compared to vehicle. AR-802 and AR-811 had no significant effect on peak and persistent INa as shown in the insets. (CI-CII) show the deceleration effect of AR-802 and AR-811 on fast inactivation onset when peak INa is measured after pre-conditioning channels at −110 mV, −90 mV, and −70 mV for 1 s as described in the Methods. (DI-DII) show the effects of both compounds with the application of 100 µM lidocaine. (EI-EII) show the effects of AR-802 and AR-811 on use-dependence.
E1784K peak INA and conductance.
| Normalized Post/Pre-Treatment peak INa at −20 mV | N | Pre-treatment | Post-treatment | N | |||
|---|---|---|---|---|---|---|---|
| GV-V1/2 (mV) | GV-z | GV-V1/2 (mV) | GV-z | ||||
|
| 0.86 ± 0.03 | 6 | −37.3 ± 2.71 | 3.41 ± 0.30 | −38.5 ± 2.15 | 3.19 ± 0.25 | 5 |
|
| 0.85 ± 0.05 | 6 | −37.5 ± 2.93 | 3.61 ± 0.38 | −38.8 ± 2.10 | 3.13 ± 0.22 | 6 |
|
| 0.87 ± 0.06 | 6 | −35.3 ± 3.52 | 3.68 ± 0.46 | −37.2 ± 2.87 | 3.19 ± 0.27 | 6 |
|
| 0.87 ± 0.03 | 6 | −34.8 ± 2.23 | 2.99 ± 0.23 | −37.6 ± 2.27 | 2.96 ± 0.25 | 6 |
|
| 0.83 ± 0.03 | 5 | −39.5 ± 3.31 | 3.84 ± 0.54 | −41.0 ± 3.42 | 3.34 ± 0.40 | 4 |
E1784K FI ONSET from I-V relationship.
| Difference post—Pre treatment (∆) | N | |||
|---|---|---|---|---|
| FI -30 mV (ms) | FI -10 mV (ms) | FI +10 mV (ms) | ||
|
| 0.20 ± 0.06 | 0.17 ± 0.05 | 0.14 ± 0.04 | 6 |
|
| 0.16 ± 0.07 | 0.15 ± 0.08 | 0.15 ± 0.08 | 6 |
|
| 0.16 ± 0.10 | 0.19 ± 0.04 | 0.20 ± 0.02 | 6 |
|
| 0.13 ± 0.09 | 0.19 ± 0.06 | 0.16 ± 0.06 | 6 |
|
| 0.06 ± 0.05 | 0.13 ± 0.03 | 0.07 ± 0.02 | 5 |
E1784K FI onset from persistent INA (−110 mV).
| Difference post—Pre treatment (∆) | N | |
|---|---|---|
|
| 0.11 ± 0.05 | 5 |
|
| 0.16 ± 0.05 | 5 |
|
| 0.38 ± 0.04*1, *2 | 6 |
|
| 0.37 ± 0.05*1 | 5 |
|
| 0.31 ± 0.05 | 5 |
*1 p < 0.05 vs. Vehicle.
*2 p < 0.05 vs. 10 µM of AR-802.