| Literature DB >> 36249068 |
Yanli Li1, Yanhan Dong2, Shupeng Zhao3, Jinning Gao2, Xiaodan Hao2, Zibo Wang4, Meng Li4, Mengyuan Wang4, Yiming Liu4, Xiaoling Yu1, Wenhua Xu4.
Abstract
Non-small cell lung cancer (NSCLC) is a major cause of death in those with malignant tumors. To achieve the early diagnosis of NSCLC, we investigated serum-derived Piwi-interacting RNA (piRNA) of extracellular vesicles to filter diagnostic biomarkers for NSCLC. High-throughput sequencing from cancerous tissues and adjacent noncancerous tissues in patients with NSCLC was first applied to recognize candidate piRNAs as diagnostic biomarkers. These screened piRNAs were further validated in 115 patients (including 95 cases in stage I) and 47 healthy individuals using quantitative real-time PCR (qRT-PCR). We showed that piR-hsa-164586 was significantly upregulated compared with paracancerous tissues and extracellular vesicles from the serum samples of healthy individuals. Moreover, the area under the curve (AUC) value of piR-hsa-164586 was 0.623 and 0.624 to distinguish patients with all stages or stage I of NSCLC, respectively, from healthy individuals. The diagnostic performance of piR-hsa-164586 was greatly improved compared with the cytokeratin-19-fragment (CYFRA21-1). Additionally, piR-hs-164586 was associated with the clinical characteristics of patients with NSCLC. Its expression was associated with the age and TNM stage of patients with NSCLC, indicating that it can serve as an effective and promising biomarker for the early diagnosis of NSCLC.Entities:
Keywords: cancer; early diagnosis; extracellular vesicles; liquid biopsy; non-small cell lung cancer; piRNA; serum
Year: 2022 PMID: 36249068 PMCID: PMC9559724 DOI: 10.3389/fonc.2022.850363
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 5.738
qPCR primer sequence.
| Gene | Primer sequence |
|---|---|
| piR-hsa-164586 | F: 5’°- CGCGTGAGAACTGAATTCCATA -3’ |
| R: S’- AGTGCAGGGTCCGAGGTATT -3’ | |
| piR-hsa-93750 | F: S’- CGCGTTACTTGATGACAATAAAATA -3’ |
| R: S’- AGTGCAGGGTCCGAGGTATT -3’ | |
| piR-hsa-137463 | F: 5’-CGCGTAGCTTATCAGACTGATG-3’ |
| R: S’°-AGTGCAGGGTCCGAGGTATT-3’ | |
| piR-hsa-34316 | F: S'-CGCGTTACTTGATGACAATAAAATAT-3’ |
| R: 5S’°- AGTGCAGGGTCCGAGGTATT-3’ | |
| piR-hsa-148318 | F: S’- CGCGTAGCTTATCAGACTGATG -3’ |
| R: 5S’°-AGTGCAGGGTCCGAGGTATT -3’ | |
| piR-hsa-171929 | F: S’- CGCGTAGCTTATCAGACTGATG -3’ |
| R: 5S’°-AGTGCAGGGTCCGAGGTATT -3’ | |
| piR-hsa-158651 | F: 5’°- CGCGTGAGAACTGAATTCCATA -3’ |
| R: 5S’°-AGTGCAGGGTCCGAGGTATT -3’ | |
| piR-hsa-143056 | F: 5’°- ATGATGAATGCCAACCGCT-3’ |
| R: S’-AGTGCAGGGTCCGAGGTATT -3’ | |
| U6 | F:5’-CTCGCTTCGGCAGCACA-3’ |
| R: S’-AACGCTTCACGAATTTGCGT-3’ |
F represents forward: R represents reverse.
Figure 1Sequencing analysis of piRNAs in cancerous and adjacent noncancerous tissues of NSCLC. (A) Hierarchical cluster and (B) Correlation Plot analysis of differential piRNAs betweencarcinoma tissues and para-carcinoma tissues of NSCLC patients (C) GO analysis (SOl, para-carcinoma tissues; SO2, carcinoma tissues).
Figure 2Identification of extracellular vesicles isolated from serum (A) the morphological characteristics of extracellular vesicles was observed by transmission electron microscope (TEM) (B) the diameter distribution and intensity of extracellular vesicles were analyzed through nano particle tracking analysis (NTA) (C) Extracellular vesicles specitic marker proteins (CD9, CD81 and TSG101) were detected by Western blotting.
Figure 3Evaluation of the stability of piR-164586 of extracellular vesicle in serum samples (A) Expression level of piR-hsa-164586 in extracellular vesicles (EV) and extracellular vesicles depleted suspension (EDS); (B) qRT-PCR analysis of the expression level of piR-hsa-164586 in extracellular vesicles with or without RNase A treatment; (C) Expression level of piR-hsa-164586 of extracellular vesicles stored at room temperature for different times (0h, 12h, 24h and 48h) (ns, no significance; *p≤0.05).
Figure 4Serum-derived piR-hsa-164586 of extracellular vesicles is a potential biomarker for NSCLC patients. (A) qRT-PCR analysis the expression level of piR-hsa-164586 of extracellular vesicles in patients with stage of NSCLC (n = 95), all stage of NSCLC (n = 115) and healthy persons (n = 47). (*p < 0.05,**p < 0.01); (B, C) ROC curve analysis for piR-hsa-164586 of extracellular vesicles in distinguishing stageor all stage of NSCLC from healthy individuals.
Figure 5Comparison of the expression of piR-hsa-164586 of extracellular vesicles in preoperative and postoperative serum samples of NSCLC patients.(ns, no significance; *p < 0.05). (A) The relative expression of piR-hsa-164586 of extracellular vesicles before and after operation; (B) The percentage of decreased expression of piR-hsa-164586 in postoperative samples is 72.41% (C) ROC curve analysis of postoperative prognostic performance of NSCLC patients(SN, sensitivity; SP, specificity).
Correlation between piR-hsa-164586 levels (2ΔCT) and clinical characteristics of patients with NSCLC (Mean+Standard Deviation).
| Categories | Case | piR-hsa-164586 | p-value |
|---|---|---|---|
| Age (years) | |||
| <55 | 35 | 0.0336+0.0968 |
|
| 56-65 | 48 | 0.1014+0.2383 | |
| >66 | 32 | 0.0606+0.1251 | |
| Gender | |||
| Male | 28 | 0.0168+0.0322 | 0.0697 |
| Female | 87 | 0.0864+0.1999 | |
| NSCLC | |||
| Subtype | |||
| AC | 109 | 0.0726+0.1812 | 0.5845 |
| SCC | 6 | 0.011940.0100 | |
| Tumor Stage | |||
| I | 95 | 0.0825+0.1922 |
|
| II | 10 | 0.0067+0.0062 | |
| III | 10 | 0.0087+0.0147 | |
| LymphNode | |||
| Metastasi | |||
| Yes | 4 | 0.0045+0.0048 | 0.6260 |
| No | 111 | 0.0724+0.1812 | |
| Smoking | |||
| Yes | 13 | 0.0198+0.0441 | 0.2848 |
| No | 102 | 0.0758+0.1864 | |
NSCLC, non-small cell lung cancer, AC, adenocarcinoma; SCC, squamous cell carcinoma. *p < 0.05.
The bold values provided means p value is less than 0.05.