| Literature DB >> 36248801 |
Cristina Segú-Vergés1, Silvia Caño2, Elisabeth Calderón-Gómez3, Helena Bartra1, Teresa Sardon1, Srini Kaveri4, José Terencio2.
Abstract
Intravenous immunoglobulin (IVIg) is used as treatment for several autoimmune and inflammatory conditions, but its specific mechanisms are not fully understood. Herein, we aimed to evaluate, using systems biology and artificial intelligence techniques, the differences in the pathophysiological pathways of autoimmune and inflammatory conditions that show diverse responses to IVIg treatment. We also intended to determine the targets of IVIg involved in the best treatment response of the evaluated diseases. Our selection and classification of diseases was based on a previously published systematic review, and we performed the disease characterization through manual curation of the literature. Furthermore, we undertook the mechanistic evaluation with artificial neural networks and pathway enrichment analyses. A set of 26 diseases was selected, classified, and compared. Our results indicated that diseases clearly benefiting from IVIg treatment were mainly characterized by deregulated processes in B cells and the complement system. Indeed, our results show that proteins related to B-cell and complement system pathways, which are targeted by IVIg, are involved in the clinical response. In addition, targets related to other immune processes may also play an important role in the IVIg response, supporting its wide range of actions through several mechanisms. Although B-cell responses and complement system have a key role in diseases benefiting from IVIg, protein targets involved in such processes are not necessarily the same in those diseases. Therefore, IVIg appeared to have a pleiotropic effect that may involve the collaborative participation of several proteins. This broad spectrum of targets and 'non-specificity' of IVIg could be key to its efficacy in very different diseases.Entities:
Keywords: B cells; IVIg Immunoglobulins; autoimmune diseases; complement system; immunomodulation; inflammatory diseases; intravenous immunoglobulin; mathematical models
Mesh:
Substances:
Year: 2022 PMID: 36248801 PMCID: PMC9563374 DOI: 10.3389/fimmu.2022.901872
Source DB: PubMed Journal: Front Immunol ISSN: 1664-3224 Impact factor: 8.786
Pathophysiological processes and number of effectors of evaluated neuroimmunological and autoimmune diseases according to reported response to IVIg.
| IVIg response cluster | Disorders | Pathophysiological processes | Number of effectors | |
|---|---|---|---|---|
| Definitely Beneficial (DB) | Chronic Inflammatory Demyelinating Polyradiculoneuropathy (CIDP) | 2- T cell-mediated response | 70 | |
| 1- Dysregulated B cell response | ||||
| 4- Complement system | ||||
| 3- Myelin damage by macrophages | ||||
| Multifocal Motor Neuropathy (MMN) | 1- Dysregulated B cell response | 26 | ||
| 4- Complement system | ||||
| 5- Myelin damage and axonal | ||||
| Guillain-Barre Syndrome (GBS) | 2- T cell-mediated response | 67 | ||
| 1- Dysregulated B cell response | ||||
| 4- Complement system | ||||
| 3- Myelin damage by macrophages | ||||
| Graves ophthalmopathy (GO) | 2- T cell-mediated response and inflammation by fibroblasts | 52 | ||
| 5- Orbital fibroblast proliferation and migration | ||||
| 1- Dysregulated B cell response | ||||
| 5- Production of ECM components by fibroblasts | ||||
| 3- Adipogenic and myofibroblastic differentiation | ||||
| Immune thrombocytopenic purpura (ITP) | 1- Dysregulated B cell response | 61 | ||
| 2- T cell-mediated response | ||||
| 4- Complement system | ||||
| 5- Suppression of megakaryocyte proliferation and maturation | ||||
| 5 - Dysfunctional mesenchymal stem cells (MSCs) | ||||
| Kawasaki Disease (KD) | 2- T cell-mediated response | 95 | ||
| 1- Dysregulated B cell response | ||||
| 4- Complement system | ||||
| 3- Exaggerated innate immune response - Systemic Inflammation | ||||
| 5- Aneurysm formation and angiogenesis | ||||
| Myasthenia Gravis (MG) | 1- Dysregulated B cell response | 67 | ||
| 2- T cell-mediated response | ||||
| 4- Complement system | ||||
| 5- Synaptic dysfunction | ||||
| 5- Muscular atrophy | ||||
| Probably Beneficial (PB) | Ig M anti-MAG paraprotein-associated peripheral neuropathy (anti-MAG IgM MGUS) | 1- Dysregulated B cell response | 22 | |
| 4- Complement system | ||||
| Lambert-Eaton Myasthenic Syndrome (LEMS) | 1- Dysregulated B cell response | 29 | ||
| 4- Complement system | ||||
| 5- Synaptic dysfunction | ||||
| 5- Muscular atrophy | ||||
| Stiff-Person Syndrome (SPS) | 1- Dysregulated B cell response | 24 | ||
| 2- T cell-mediated response | ||||
| 5- Synaptic dysfunction | ||||
| Dermatomyositis (DM) | 3- Exaggerated innate immune response | 61 | ||
| 2- T cell-mediated response | ||||
| 4- Complement system | ||||
| 5- Skin and muscle atrophy | ||||
| 1- Dysregulated B cell response | ||||
| Probably Beneficial | Birdshot retinochoroidopathy (BSRC) | 2- Abnormal T cell activation | 23 | |
| 2- T cell-mediated response | 3- and inflammatory mediators’ perpetuation | |||
| Henoch-Schonlein purpura (HSP) | 3- Exaggerated innate immune response | 48 | ||
| 1- Dysregulated B cell response | ||||
| 2- T cell-mediated response | ||||
| 4- Complement system | ||||
| 5- Accelerated extracellular matrix breakdown | ||||
| May Provide Benefit (MPB) | Relapsing-Remitting Multiple Sclerosis (RRMS) | 3- Exaggerated innate immune response | 109 | |
| 2 -T cell-mediated response | ||||
| 1- Dysregulated B cell response | ||||
| 4- Complement system | ||||
| 5- Impaired neurotransmission | ||||
| Intractable childhood epilepsy (ICE) | 5- Drug-resistance | 79 | ||
| 5- Ion and neurotransmitter imbalance | ||||
| 3- Neuroinflammation by microglia and astrocytes | ||||
| Postpolio syndrome (PPS) | 3- Systemic inflammation | 19 | ||
| 5- Synaptic toxicity (induced by inflammatory mediators) | ||||
| 5- Muscular atrophy and inflammatory response | ||||
| Juvenile idiopathic arthritis (JIA) | 3- Exaggerated innate immune response | 87 | ||
| 2- T cell-mediated response | ||||
| 1- Dysregulated B cell response | ||||
| 3- NK cells dysfunction | ||||
| 2- Defective Tregs immunoregulation | ||||
| 4- Complement system | ||||
| 5- Joint damage | ||||
| Anti-phospholipid antibody syndrome in pregnancy (APS) | 5- Abnormal placental development | 45 | ||
| 3- Innate Immune Response | ||||
| 1- Dysregulated B cell response | ||||
| 4- Complement system | ||||
| 5- Thrombosis factor dysregulation | ||||
| Severe rheumatoid arthritis (sRA) | 2- T cell-mediated response | 148 | ||
| 1- Dysregulated B cell response | ||||
| 3- Synovial inflammation | ||||
| 5- Articular destruction | ||||
| 5- Bone erosion | ||||
| Still disease (SD) | 2- T cell-mediated response | 63 | ||
| 3- Exaggerated innate immune response | ||||
| 3- NK cells dysfunction | ||||
| Felty’s syndrome (FS) | 3- Exaggerated innate immune response | 21 | ||
| 1- Dysregulated B cell response | ||||
| 5- Neutropenia | ||||
| Macrophage activation syndrome (MAS) | 3- Exaggerated innate immune response | 29 | ||
| 2- T cell-mediated response | ||||
| 3- NK cells dysfunction | ||||
| 3- Cell death by activated macrophages | ||||
| Unlikely to Provide Benefit (UPB) | Polyarteritis nodosa (PAN) | 3- Exaggerated innate immune response | 28 | |
| 2- T cell-mediated response | ||||
| 2- Defective Tregs immunoregulation | ||||
| 5- Endothelial cells damage | ||||
| Adrenoleukodystrophy (ALD) | 5- VLCFA accumulation | 61 | ||
| 2- T cell-mediated response | ||||
| 5- Oxidative stress | ||||
| 3- Myelin damage by macrophages | ||||
| Inclusion body myositis (IBM) | 3- Exaggerated innate immune response | 71 | ||
| 2- T cell-mediated response | ||||
| 5- Muscle degeneration | ||||
| Crohn's Disease (CD) | 5- Intestinal barrier disruption | 142 | ||
| 3- Dysregulated intestinal immune response | ||||
| 2- T cell-mediated response | ||||
| 5- Tissue remodeling | ||||
IVIg, Intravenous immunoglobulin.
(Immune system) process grouping: 1- B cell-mediated processes 2- T cell -mediated processes 3- Innate immunity and inflammatory processes 4- Complement system 5- Other processes
List of IVIg protein targets (direct targets) identified by literature search and classified according to their related immunological function.
| UniProt ID | Protein Name | Gene Name | Functional group | IVIg effect | Ref. |
|---|---|---|---|---|---|
| P20273 | B-cell receptor CD22 | CD22 | B-cell related | ↑ | ( |
| P08637 | Low affinity immunoglobulin gamma Fc region receptor III-A | FCGR3A/CD16a | B-cell related | ↓ | ( |
| O75015 | Low affinity immunoglobulin gamma Fc region receptor III-B | FCGR3B/CD16b | B-cell related | ↓ | ( |
| P12318 | Low affinity immunoglobulin gamma Fc region receptor II-a | FCGR2A/CD32 | B-cell related | ↓ | ( |
| P55899 | IgG receptor FcRn large subunit p51 | FCGRT | B-cell related | ↓ | ( |
| Q9Y275 | Tumor necrosis factor ligand superfamily member 13B | TNFSF13B, BAFF | B-cell related | ↓ | ( |
| O75888 | Tumor necrosis factor ligand superfamily member 13 | TNFSF13, | B-cell related | ↓ | ( |
| Q9NYZ4 | Sialic acid-binding Ig-like lectin 8 | SIGLEC8 | Antigen presentation | ↑ | ( |
| Q9Y336 | Sialic acid-binding Ig-like lectin 9 | SIGLEC9 | Antigen presentation | ↑ | ( |
| P02745 | Complement C1q subcomponent subunit A | C1QA | Complement system | ↓ | ( |
| P00736 | Complement C1r subcomponent chain | C1R | Complement system | ↓ | ( |
| P09871 | Complement C1s subcomponent | C1S | Complement system | ↓ | ( |
| P01024 | Complement C3 | C3 | Complement system | ↓ | ( |
| P01031 | Complement C5 | C5 | Complement system | ↓ | ( |
| P0C0L5 | Complement C4-B | C4B | Complement system | ↓ | ( |
| – | HLA class I and II (includes 21 proteins) | HLA | HLA | ↓ | ( |
| P25445 | Tumor necrosis factor receptor superfamily member 6 | FAS | Apoptosis | ↑↓ | ( |
| Q9NNX6 | CD209 antigen | CD209, | Innate immunity | ↑ | ( |
| Q9UMR7 | C-type lectin domain family 4 member A | CLEC4A, | Innate immunity | ↑ | ( |
| P51681 | C-C chemokine receptor type 5 | CCR5 | Innate immunity, T-cell related | ↓ | ( |
| P0DSE2 | M1-specific T cell receptor beta chain | TRB | T-cell related | ↓ | ( |
| P06127 | T-cell surface glycoprotein CD5 | CD5 | T-cell related | ↓ | ( |
| P01730 | T-cell surface glycoprotein CD4 | CD4 | T-cell related | ↓ | ( |
HLA, Human leukocyte antigen; IVIg, Intravenous immunoglobulin; Ref., Reference.
↓, Inhibition; ↑, Activation.
Indirect protein targets modulated by IVIg according to the literature.
| Uniprot ID | Protein Name | Gene Name | Effect | Reference |
|---|---|---|---|---|
| P55774 | C-C motif chemokine 18 | CCL18 |
| ( |
| P13500 | C-C motif chemokine 2 | CCL2 |
| ( |
| P78556 | C-C motif chemokine 20 | CCL20 |
| ( |
| P25942 | Tumor necrosis factor receptor superfamily member 5 | CD40 |
| ( |
| P33681 | T-lymphocyte activation antigen CD80 | CD80 |
| ( |
| P42081 | T-lymphocyte activation antigen CD86 | CD86 |
| ( |
| P46527 | Cyclin-dependent kinase inhibitor 1B | CDKN1B |
| ( |
| Q9ULM6 | CCR4-NOT transcription complex subunit 6 | CNOT6 |
| ( |
| P20023 | Complement receptor type 2 | CR2 |
| ( |
| P04141 | Granulocyte-macrophage colony-stimulating factor | CSF2 |
| ( |
| P16410 | Cytotoxic T-lymphocyte protein 4 | CTLA4 |
| ( |
| P31994 | Low affinity immunoglobulin gamma Fc region receptor II-b | FCGR2B |
| ( |
| Q9BZS1 | Forkhead box protein P3 | FOXP3 |
| ( |
| P05362 | Intercellular adhesion molecule 1 | ICAM1 |
| ( |
| P01579 | Interferon gamma | IFNG |
| ( |
| P38484 | Interferon gamma receptor 2 | IFNGR2 |
| ( |
| P22301 | Interleukin-10 | IL10 |
| ( |
| P29459 | Interleukin-12 subunit alpha | IL12A |
| ( |
| P29460 | Interleukin-12 subunit beta | IL12B |
| ( |
| P35225 | Interleukin-13 | IL13 |
| ( |
| Q16552 | Interleukin-17A | IL17A |
| ( |
| Q96PD4 | Interleukin-17F | IL17F |
| ( |
| P01584 | Interleukin-1 beta | IL1B |
| ( |
| P18510 | Interleukin-1 receptor antagonist protein | IL1RN |
| ( |
| P60568 | Interleukin-2 | IL2 |
| ( |
| Q9HBE4 | Interleukin-21 | IL21 |
| ( |
| P08700 | Interleukin-3 | IL3 |
| ( |
| O95760 | Interleukin-33 | IL33 |
| ( |
| P05112 | Interleukin-4 | IL4 |
| ( |
| P05113 | Interleukin-5 | IL5 |
| ( |
| P05231 | Interleukin-6 | IL6 |
| ( |
| P20701 | Integrin alpha-L | ITGAL |
| ( |
| P01374 | Lymphotoxin-alpha | LTA |
| ( |
| P28482 | Mitogen-activated protein kinase 1 | MAPK1 |
| ( |
| Q15759 | Mitogen-activated protein kinase 11 | MAPK11 |
| ( |
| P53778 | Mitogen-activated protein kinase 12 | MAPK12 |
| ( |
| O15264 | Mitogen-activated protein kinase 13 | MAPK13 |
| ( |
| Q16539 | Mitogen-activated protein kinase 14 | MAPK14 |
| ( |
| P27361 | Mitogen-activated protein kinase 3 | MAPK3 |
| ( |
| P14780 | Matrix metalloproteinase-9 | MMP9 |
| ( |
| P19838 | Nuclear factor NF-kappa-B p105 subunit | NFKB1 |
| ( |
| Q00653 | Nuclear factor NF-kappa-B p100 subunit | NFKB2 |
| ( |
| P35228 | Nitric oxide synthase, inducible | NOS2 |
| ( |
| P42336 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform | PIK3CA |
| ( |
| P42338 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform | PIK3CB |
| ( |
| O00329 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform | PIK3CD |
| ( |
| P48736 | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform | PIK3CG |
| ( |
| P16885 | 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2 | PLCG2 |
| ( |
| P35354 | Prostaglandin G/H synthase 2 | PTGS2 |
| ( |
| P51449 | Nuclear receptor ROR-gamma | RORC |
| ( |
| P05109 | Protein S100-A8 | S100A8 |
| ( |
| P06702 | Protein S100-A9 | S100A9 |
| ( |
| P16581 | E-selectin | SELE |
| ( |
| P16109 | P-selectin | SELP |
| ( |
| P40763 | Signal transducer and activator of transcription 3 | STAT3 |
| ( |
| P01137 | Transforming growth factor beta-1 proprotein | TGFB1 |
| ( |
| P61812 | Transforming growth factor beta-2 proprotein | TGFB2 |
| ( |
| Q9NYK1 | Toll-like receptor 7 | TLR7 |
| ( |
| Q9NR96 | Toll-like receptor 9 | TLR9 |
| ( |
| P01375 | Tumor necrosis factor | TNF |
| ( |
| Q9Y5U5 | Tumor necrosis factor receptor superfamily member 18 | TNFRSF18 |
| ( |
| P43403 | Tyrosine-protein kinase ZAP-70 | ZAP70 |
| ( |
↓, Inhibition; ↑, Activation.
Figure 1Results from the pathophysiological process grouping independence analysis with respect to different IVIg response clusters. Table (A) and graph (B) show the frequency (%) of conditions in each response cluster associated with each pathophysiological process. * Statistical significant (p< 0.05) result of the chi-squared test indicating dependence between the pathophysiological process group and cluster based in IVIg response.
Figure 2Protein and functional overlap between the IVIg response-based clusters of diseases. (A) Binary tree based on protein overlap among the disease clusters according to IVIg response. Percentages indicate the arithmetic mean of proportions of protein overlap of each pair of disease clusters or group of clusters in the tree branches; (B) Overlap of protein effectors between diseases with different response to IVIg (Venn diagram created with InteractiVenn (27)) and number of enriched pathways in the three protein sets defined according to the response-based clusters of diseases. the sets were defined in terms of number of proteins and enriched pathways according to the hypergeometric method (FDR q-value< 0.05); (C) Network representation of the 81 pathways enriched in the DB w/o UPB set of proteins (see ) considering a Haussdorf distance< 1. IVIg: Intravenous immunoglobulin; only-DB: Protein effectors exclusively present in the IVIg ‘definitely beneficial’ cluster of diseases; DB w/o UPB: Protein effectors present in the IVIg ‘definitely beneficial’ cluster of diseases but not in the IVIg ‘unlikely to provide benefit’ cluster; only-UPB: Protein effectors exclusively present in the IVIg ‘unlikely to provide benefit’ cluster of diseases.
Figure 3Predicted relationship between each studied immune-related disorder and each pathophysiological process affected by IVIg according to ANN. ANN, Artificial Neural Network; IVIg, Intravenous immunoglobulin.
Figure 4Predicted relationship between each studied disorder and (A) each complement system protein target of IVIg or (B) each B-cell related IVIg protein target according to ANN. ANN, Artificial Neural Network; IVIg, Intravenous immunoglobulin.
Functional relation (ANN score) between IVIg protein targets and diseases from the DB cluster according to ANN analysis.
| CIDP | MMN | GBS | MG | GO | ITP | KD | |
|---|---|---|---|---|---|---|---|
| FAS (P25445) | ++ | + | + | + | + | ++ | + |
| FCGR3A (P08637) |
|
| – | + | – | – | – |
| FCGR3B (O75015) | ++ |
| – | + | – | – | + |
| FCGR2A (P12318) | + | + | + | + | + | + |
|
| TNFSF13 (O75888) | + | – | – | + | – |
| + |
| TNFSF13B (Q9Y275) | – | – | – | – | – |
| ++ |
| SIGLEC9 (Q9Y336) | – | – | – | – | ++ | – | – |
| C5 (P01031) |
| ++ |
|
| – | – | ++ |
| C3 (P01024) | ++ | + | + |
| – | ++ |
|
| C4B (P0C0L5) | – |
|
| ++ | – |
| + |
| C1QA (P02745) | – | + | + | + | ++ | + | + |
| C1R (P00736) | – | + | ++ | – | + | + | – |
| C1S (P09871) | – | + | ++ | – | + | + | – |
| HLA-DPA1 (P20036) |
| + |
| + | – | ++ | + |
| HLA-DQA1 (P01909) | ++ | + | + | ++ | – | + | + |
| HLA-DRA (P01903) | ++ | + | + | + | ++ | + | – |
| HLA-DPB1 (P04440) | ++ | – | – | – | – | + | – |
| HLA-B (P01889) | + | – | – | + | – | – | ++ |
| CLEC4A (Q9UMR7) | ++ | + | ++ | ++ | ++ | ++ | ++ |
| CD209 (Q9NNX6) | ++ | – | + | + | ++ | + | ++ |
| CCR5 (P51681) |
| – | + | + | + | + | + |
| CD4 (P01730) | ++ | + |
| + | – | + | + |
ANN scores represent the probability for the relationship to be a true positive: +++ (in bold) correspond to a strong relationship and values > 78% (p-value <0.05); ++ correspond to a medium-strong relationship and values > 71% (p-value <0.1); + correspond to a medium relationship and values >38% (p-value <0.25); and – correspond to low or no relationship and values ≤ 38% (p-value ≥0.25).
ANN, Artificial Neural Network; CIDP, Chronic inflammatory demyelinating polyradiculoneuropathy; DB, Definitely beneficial; GBS, Guillain-Barre syndrome; GO, Graves ophthalmopathy; HLA, Human leukocyte antigen; ITP, Immune thrombocytopenic purpura; IVIg, Intravenous immunoglobulin; KD, Kawasaki disease; MG, Myasthenia gravis; MMN, Multifocal motor neuropathy.
Only targets with a strong relationship with at least one disease are shown. Proteins are shown as gene name (Uniprot ID) and related functional group.