Literature DB >> 36240060

An optimized protocol for assessing changes in mouse whole-brain activity using opto-fMRI.

Christina Grimm1, Nicole Wenderoth2, Valerio Zerbi3.   

Abstract

Functional magnetic resonance imaging (fMRI) in mouse brain, paired with spatially and temporally defined manipulations, offers a powerful tool to causally explain the effect of specific neuronal activity on brain network dynamics. Here, we present an optimized protocol to measure cell-type-specific contributions to changes in whole-brain dynamics in mice using optogenetics (opto)-fMRI. This protocol details the injection of ChR2-expressing AAV, the implantation of optical fiber, the steps to perform opto-BOLD (blood-oxygenation-level-dependent) fMRI recording, and data analysis. For complete details on the use and execution of this protocol, please refer to Grimm et al. (2021).
Copyright © 2022 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bioinformatics; Model Organisms; Neuroscience; Systems biology

Year:  2022        PMID： 36240060      PMCID： PMC9568887          DOI： 10.1016/j.xpro.2022.101761

Source DB:  PubMed          Journal:  STAR Protoc        ISSN： 2666-1667


  14 in total

1.  Inhibiting mGluR5 activity by AFQ056/Mavoglurant rescues circuit-specific functional connectivity in Fmr1 knockout mice.

Authors:  Valerio Zerbi; Marija Markicevic; Fabrizio Gasparini; Aileen Schroeter; Markus Rudin; Nicole Wenderoth
Journal:  Neuroimage       Date:  2019-02-23       Impact factor: 6.556

2.  Common functional networks in the mouse brain revealed by multi-centre resting-state fMRI analysis.

Authors:  Joanes Grandjean; Carola Canella; Cynthia Anckaerts; Gülebru Ayrancı; Salma Bougacha; Thomas Bienert; David Buehlmann; Ludovico Coletta; Daniel Gallino; Natalia Gass; Clément M Garin; Nachiket Abhay Nadkarni; Neele S Hübner; Meltem Karatas; Yuji Komaki; Silke Kreitz; Francesca Mandino; Anna E Mechling; Chika Sato; Katja Sauer; Disha Shah; Sandra Strobelt; Norio Takata; Isabel Wank; Tong Wu; Noriaki Yahata; Ling Yun Yeow; Yohan Yee; Ichio Aoki; M Mallar Chakravarty; Wei-Tang Chang; Marc Dhenain; Dominik von Elverfeldt; Laura-Adela Harsan; Andreas Hess; Tianzi Jiang; Georgios A Keliris; Jason P Lerch; Andreas Meyer-Lindenberg; Hideyuki Okano; Markus Rudin; Alexander Sartorius; Annemie Van der Linden; Marleen Verhoye; Wolfgang Weber-Fahr; Nicole Wenderoth; Valerio Zerbi; Alessandro Gozzi
Journal:  Neuroimage       Date:  2019-10-12       Impact factor: 6.556

3.  Mapping the mouse brain with rs-fMRI: An optimized pipeline for functional network identification.

Authors:  Valerio Zerbi; Joanes Grandjean; Markus Rudin; Nicole Wenderoth
Journal:  Neuroimage       Date:  2015-08-18       Impact factor: 6.556

4.  A simple method of mouse lung intubation.

Authors:  Sandhya Das; Kelvin MacDonald; Herng-Yu Sucie Chang; Wayne Mitzner
Journal:  J Vis Exp       Date:  2013-03-21       Impact factor: 1.355

5.  A reproducible evaluation of ANTs similarity metric performance in brain image registration.

Authors:  Brian B Avants; Nicholas J Tustison; Gang Song; Philip A Cook; Arno Klein; James C Gee
Journal:  Neuroimage       Date:  2010-09-17       Impact factor: 6.556

6.  Optogenetic activation of striatal D1R and D2R cells differentially engages downstream connected areas beyond the basal ganglia.

Authors:  Christina Grimm; Stefan Frässle; Céline Steger; Lukas von Ziegler; Oliver Sturman; Noam Shemesh; Daria Peleg-Raibstein; Denis Burdakov; Johannes Bohacek; Klaas Enno Stephan; Daniel Razansky; Nicole Wenderoth; Valerio Zerbi
Journal:  Cell Rep       Date:  2021-12-28       Impact factor: 9.423

7.  The optimal template effect in hippocampus studies of diseased populations.

Authors:  Brian B Avants; Paul Yushkevich; John Pluta; David Minkoff; Marc Korczykowski; John Detre; James C Gee
Journal:  Neuroimage       Date:  2009-10-08       Impact factor: 6.556

8.  Cortical Excitation:Inhibition Imbalance Causes Abnormal Brain Network Dynamics as Observed in Neurodevelopmental Disorders.

Authors:  Marija Markicevic; Ben D Fulcher; Christopher Lewis; Fritjof Helmchen; Markus Rudin; Valerio Zerbi; Nicole Wenderoth
Journal:  Cereb Cortex       Date:  2020-07-30       Impact factor: 5.357

Review 9.  TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry.

Authors:  Stefan Frässle; Eduardo A Aponte; Saskia Bollmann; Kay H Brodersen; Cao T Do; Olivia K Harrison; Samuel J Harrison; Jakob Heinzle; Sandra Iglesias; Lars Kasper; Ekaterina I Lomakina; Christoph Mathys; Matthias Müller-Schrader; Inês Pereira; Frederike H Petzschner; Sudhir Raman; Dario Schöbi; Birte Toussaint; Lilian A Weber; Yu Yao; Klaas E Stephan
Journal:  Front Psychiatry       Date:  2021-06-02       Impact factor: 4.157

10.  Dysfunctional Autism Risk Genes Cause Circuit-Specific Connectivity Deficits With Distinct Developmental Trajectories.

Authors:  Valerio Zerbi; Giovanna D Ielacqua; Marija Markicevic; Matthias Georg Haberl; Mark H Ellisman; Arjun A-Bhaskaran; Andreas Frick; Markus Rudin; Nicole Wenderoth
Journal:  Cereb Cortex       Date:  2018-07-01       Impact factor: 5.357
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