| Literature DB >> 36235448 |
Jorge Ugarte Fajardo1, María Maridueña-Zavala2, Juan Cevallos-Cevallos2,3, Daniel Ochoa Donoso4.
Abstract
Current chemical methods used to control plant diseases cause a negative impact on the environment and increase production costs. Accurate and early detection is vital for designing effective protection strategies for crops. We evaluate advanced distributed edge intelligence techniques with distinct learning principles for early black sigatoka disease detection using hyperspectral imaging. We discuss the learning features of the techniques used, which will help researchers improve their understanding of the required data conditions and identify a method suitable for their research needs. A set of hyperspectral images of banana leaves inoculated with a conidial suspension of black sigatoka fungus (Pseudocercospora fijiensis) was used to train and validate machine learning models. Support vector machine (SVM), multilayer perceptron (MLP), neural networks, N-way partial least square-discriminant analysis (NPLS-DA), and partial least square-penalized logistic regression (PLS-PLR) were selected due to their high predictive power. The metrics of AUC, precision, sensitivity, prediction, and F1 were used for the models' evaluation. The experimental results show that the PLS-PLR, SVM, and MLP models allow for the successful detection of black sigatoka disease with high accuracy, which positions them as robust and highly reliable HSI classification methods for the early detection of plant disease and can be used to assess chemical and biological control of phytopathogens.Entities:
Keywords: black sigatoka; deep learning; hyperspectral imaging; machine learning; plant disease
Year: 2022 PMID: 36235448 PMCID: PMC9573703 DOI: 10.3390/plants11192581
Source DB: PubMed Journal: Plants (Basel) ISSN: 2223-7747
Figure 1Spectral signature of healthy vegetation [12].
Severity scale of banana leaves affected by black sigatoka disease (BLSD).
| Stage | Symptoms |
|---|---|
| 1 | Yellow spots (<1 mm in diameter) on the abaxial leaf surfaces. |
| 2 | Red to brown streaks from 1 to 5 mm. |
| 3 | Red to brown streaks greater than 5 mm. |
| 4 | Brown elliptical streaks on the abaxial leaf surface and black streaks on the adaxial leaf surface. |
| 5 | The streak is fully black with a yellow halo and has spread to the abaxial leaf surface. |
| 6 | The center of the streak is light gray surrounded by a black ring and a yellow halo. |
Figure 2Schematic diagram of the research process to detect black sigatoka disease using hyperspectral images.
Figure 3Estimated probability of infection from external validation of the models.
Comparative table of models evaluation metrics in the training phase.
| Training | ||||
|---|---|---|---|---|
| Models | Accuracy | Precision | Sensitivity | F1 Score |
| PLS-PLR 1 | 0.98 | 0.98 | 1 | 0.99 |
| NPLS-DA | 0.9 | 1 | 0.88 | 0.94 |
| Linear SVM | 1 | 1 | 1 | 1 |
| Polynomial SVM | 1 | 1 | 1 | 1 |
| MLP 1 | 1 | 1 | 1 | 1 |
| MLP 2 | 1 | 1 | 1 | 1 |
1 The PLS-PLR model was evaluated using the leave-one-out cross-validation (LOOCV) method. The SVM, MLP, and PLS-PLR models correctly classified all the training data, while the NPLS-DA model failed to separate the classes.
Comparative table of models evaluation metrics in the validation phase.
| Validation | |||||
|---|---|---|---|---|---|
| Models | Accuracy | Precision | Sensitivity | F1 Score | AUC |
| PLS-PLR | 0.94 | 0.94 | 0.94 | 0.94 | 0.94 |
| NPLS-DA | 0.91 | 0.88 | 0.94 | 0.91 | 0.91 |
| Linear SVM | 0.94 | 0.89 | 1 | 0.94 | 0.94 |
| Polynomial SVM | 0.94 | 0.89 | 1 | 0.94 | 0.94 |
| MLP 1 | 0.94 | 0.89 | 1 | 0.94 | 0.94 |
| MLP 2 | 0.94 | 0.89 | 1 | 0.94 | 0.94 |
Classification errors in external validation tests.
| Classification Errors | ||||
|---|---|---|---|---|
| Model | Leaf Number | Probability | Prediction | Label |
| PLS-PLR | 15 | 0.9999 | Infected | healthy |
| 20 | 0.0061 | healthy | Infected | |
| Linear SVM | 13 | 0.9548 | Infected | healthy |
| 15 | 0.9757 | Infected | healthy | |
| MLP 1 | 13 | 0.9931 | Infected | healthy |
| 15 | 0.9942 | Infected | healthy | |
Figure 4Spectral signature of 13th Leaf (E13 dark green color) compared with the spectral signature of healthy banana leaves and infected banana leaves.
Figure 5Spectral signature of 20th leaf (E20 black color) compared with the spectral signature of healthy banana leaves and infected banana leaves.
Figure 6HS-Biplot of validation dataset highlighting misclassified leaves.