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Correction: Franz et al. Unraveling a Force-Generating Allosteric Pathway of Actomyosin Communication Associated with ADP and Pi Release. Int. J. Mol. Sci. 2021, 22, 104.

Peter Franz1, Wiebke Ewert2, Matthias Preller2,3, Georgios Tsiavaliaris1.   

Abstract

The author wishes to make the following correction to this paper [...].

Entities:  

Year:  2022        PMID: 36233360      PMCID: PMC9552523          DOI: 10.3390/ijms231911121

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   6.208


Table and Figure Legend

The author wishes to make the following correction to this paper [1]: In the original article, there were following mistakes: A common term was incorrectly used in the legend for Table 2. The incorrect parameters “Steady-state ATPase” should be replaced with “Steady-state ATPase Activity”. A parameter was incorrectly assigned in the legend for Table 4. The incorrect parameters “k′+5/K′5K′6” should be replaced with “k′+5K′5K′6”. Parameters were incorrectly assigned in the legend for Figure 5. The incorrect parameters “K′5K′6” should be replaced with “1/(K′5K′6)”. Parameters were incorrectly assigned in the legend for Figure 6. The incorrect parameters “K′DPAk+4” should be replaced with “k+4K′DPA”.

Error in Table

In the original article, there was a mistake in Table 3 as published. Rate and equilibrium constants, and corresponding values were incorrectly assigned. The corrected Table 3 appears below.
Table 3

Transient kinetic parameters and equilibrium constants in the absence of actin.

UnitM765wtM765AAM765GGG
ATP binding to myosin 1
K 1 k +2 (µM−1s−1)0.48 ± 0.010.38 ± 0.010.38 ± 0.01
k −2 (s−1)0.79 ± 0.490.54 ± 0.240.43 ± 0.25
k+3+k−3(s−1)42 ± 161 ± 2106 ± 8
ADP binding to myosin 1
k −5 K 6 (µM−1s−1)0.58 ± 0.020.38 ± 0.020.49 ± 0.01
k +5 (s−1)1.6 ± 0.11.8 ± 0.11.9 ± 0.1
1/(K5K6)(µM)2.8 ± 0.24.7 ± 0.43.9 ± 0.2
Rate of Pi release 1
k +4 (s−1)0.02 ± 0.01n.d.0.02 ± 0.01

1 at 20 °C.

Transient kinetic parameters and equilibrium constants in the absence of actin. 1 at 20 °C. In the original article, there were mistakes in Tables 4 and 5 as published. Rate and equilibrium constants and a unit were incorrectly assigned. The corrected Table 4 and Table 5 appear below.
Table 4

Transient kinetic parameters and equilibrium constants in the presence of actin.

Unit M765wt M765AA M765GGG
Actomyosin interactions in the absence and presence of ADP
k′ +A (µM−1s−1)0.64 ± 0.030.61 ± 0.030.61 ± 0.03
k′ -A (s−1)0.0030.0040.005
1/K′ A 1 (µM)0.0057 ± 0.00050.010 ± 0.0090.011 ± 0.009
k′ +DA (µM−1s−1)0.12 ± 0.01n.d.0.18 ± 0.01
k′ -DA (s−1)0.006 ± 0.001n.d.0.005 ± 0.001
1/K′ DA 2 (µM)0.063 ± 0.002n.d.0.024 ± 0.001
ATP interactions of actomyosin
K′ 1 k′ +2 (µM−1s−1)0.24 ± 0.010.32 ± 0.010.92 ± 0.01
k′ +2 (s−1)719 ± 22871 ± 80923 ± 19
k′ −2 (s−1)0.08 ± 0.050.62 ± 0.051.48 ± 0.13
1/K′ 1 (µM)3200 ± 1302702 ± 279883 ± 30
ADP interactions of actomyosin
k′ 5 K′ 6 3 (µM−1s−1)>1.0 / >0.74>1.47 / >2.944.7 ± 1 / 3.6 ± 1 4
1/(K′5K′6) (µM)135 ± 10 534 ± 4 53.4 ± 1 6
k′+5 (s−1)>100 7>100 716 ± 1 8
Pi kinetics of actomyosin
k′ +4 (s−1)3.8 ± 1.1n.d.14.4 ± 1.0
k′ +4 K′ DPA (µM−1s−1)0.04 ± 0.01n.d.0.79 ± 0.08
1/K′ DPA (µM)94 ± 32n.d.18 ± 3
Weak-to-strong transition
k′ weak-strong (s−1)1.0 ± 0.01n.d.2.6 ± 0.04
Duty ratio
tstrong/ttotal%3 ± 1<4 ± 149 ± 4
Experimental%<1n.d.35

1 Calculated: /; 2 calculated: /; 3 calculated from ; 4 obtained from linear fit of kfast of competitive ATP/ADP binding experiment with 25 µM ATP; 5 obtained from ADP-inhibition of ATP-induced dissociation; 6 obtained from hyperbolic fits of Aslow and Afast (Figure 5g); 7 estimated form the rate of ADP inhibition of ATP-induced dissociation at excess ADP concentrations; 8 y-intercept of hyperbola in Figure 5i; n.d. not determined.

Table 5

Parameters used for the estimation of the fractional occupancies of intermediate states.

Unit M765 wt M765 AA M765 GGG
Equilibrium constants
K′ DPA (µM−1)0.010.010.05
K′ 4 (µM−1)0.000010.000010.00001
K′ 5 -0.50.747.14
K′ 6 (µM−1)0.020.020.02
K′ 1 (µM−1)0.00030.0040.001
K′ 2 -89881405624
K′ TA (µM−1)0.0010.0010.001
K 3 -9.59.29.6
K′ 3 -959296
Rate constants of forward reactions
k′ +DPA (µM−1s−1)101050
k′ +4 (s−1)3.85.014.4
k′ +5 (s−1)23516020
k′ +6 (s−1)100010001000
k′ +1 (µM−1s−1)100100100
k′ +2 (s−1)719871923
k′ +TA (s−1)100010001000
k +3 (s−1)385596
k′ +3 (s−1)385596
Rate constants of backwards reactions
k′ -DPA (s−1)100010001000
k′ −4 (µM−1s−1)0.0000380.000050.000144
k′ −5 (s−1)4702162.8
k′ −6 (µM−1s−1)202020
k′ −1 (s−1)33330025000088500
k′ −2 (s−1)0.080.621.48
k′ -TA (µM−1s−1)111
k −3 (s−1)4610
k′ −3 (s−1)0.40.61
Transient kinetic parameters and equilibrium constants in the presence of actin. 1 Calculated: /; 2 calculated: /; 3 calculated from ; 4 obtained from linear fit of kfast of competitive ATP/ADP binding experiment with 25 µM ATP; 5 obtained from ADP-inhibition of ATP-induced dissociation; 6 obtained from hyperbolic fits of Aslow and Afast (Figure 5g); 7 estimated form the rate of ADP inhibition of ATP-induced dissociation at excess ADP concentrations; 8 y-intercept of hyperbola in Figure 5i; n.d. not determined. Parameters used for the estimation of the fractional occupancies of intermediate states.

Text Correction

There were following errors in the original article. A correction has been made to 2. Results and Discussion: Paragraph 8. The incorrect constants “K′5K′6” should be replaced with “1/(K′5K′6)”. Paragraph 10. The incorrect constants “K′DPA” should be replaced with “1/K′DPA”. The incorrect constants “K′DPAk′+4” should be replaced with “k′+4K′DPA”. Paragraph 11. The incorrect constants “K′DPA” should be replaced with “1/K′DPA”. A correction has been made to 3. Conclusions, Paragraph 1. The incorrect constants “K′5K′6” should be replaced with “1/K′5K′6”. The authors state that the scientific conclusions are unaffected. This correction was approved by the Academic Editor. The original publication has also been updated.
  1 in total

1.  Unraveling a Force-Generating Allosteric Pathway of Actomyosin Communication Associated with ADP and Pi Release.

Authors:  Peter Franz; Wiebke Ewert; Matthias Preller; Georgios Tsiavaliaris
Journal:  Int J Mol Sci       Date:  2020-12-24       Impact factor: 6.208

  1 in total

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