| Literature DB >> 36230404 |
Hélène Soyeurt1, Cyprien Gerards1, Charles Nickmilder1, Jérôme Bindelle1, Sébastien Franceschini1, Frédéric Dehareng2, Didier Veselko3, Carlo Bertozzi4, Nicolas Gengler1, Antonino Marvuglia5, Alper Bayram5,6, Anthony Tedde1,7.
Abstract
This research aims to develop a predictive model to discriminate milk produced from a cattle diet either based on grass or not using milk mid-infrared spectrometry and the month of testing (an indirect indicator of the feeding ration). The dataset contained 3,377,715 spectra collected between 2011 and 2021 from 2449 farms and 3 grazing traits defined following the month of testing. Records from 30% of the randomly selected farms were kept in the calibration set, and the remaining records were used to validate the models. Around 90% of the records were correctly discriminated. This accuracy is very good, as some records could be erroneously assigned. The probability of belonging to the GRASS modality allowed confirmation of the model's ability to detect the transition period even if the model was not trained on this data. Indeed, the probability increased from the spring to the summer and then decreased. The discrimination was mainly explained by the changes in the milk fat, mineral, and protein compositions. A hierarchical clustering from the averaged probability per farm and year highlighted 12 groups illustrating different management practices. The probability of belonging to the GRASS class could be used in a tool counting the number of grazing days.Entities:
Keywords: composition; grass; grazing; mid-infrared; milk; spectrometry; spectrum
Year: 2022 PMID: 36230404 PMCID: PMC9559478 DOI: 10.3390/ani12192663
Source DB: PubMed Journal: Animals (Basel) ISSN: 2076-2615 Impact factor: 3.231
Figure 1Data flow.
Specifications of equations used to provide the used predictors.
| Traits | Unit | N 1 | R2 | RMSE 2 | Ref. 3 |
|---|---|---|---|---|---|
| Milk yield | kg/day | 457 | 0.69 | 3.48 | NP 4 |
| C4:0 | g/dL lait | 1371 | 0.93 | 0.008 | [ |
| C6:0 | g/dL lait | 1371 | 0.91 | 0.006 | [ |
| C8:0 | g/dL lait | 1371 | 0.91 | 0.004 | [ |
| C10:0 | g/dL lait | 1371 | 0.92 | 0.010 | [ |
| C12:0 | g/dL lait | 1371 | 0.93 | 0.011 | [ |
| C14:0 | g/dL lait | 1371 | 0.94 | 0.030 | [ |
| C14:1 cis | g/dL lait | 1371 | 0.71 | 0.008 | [ |
| C16:0 | g/dL lait | 1371 | 0.95 | 0.091 | [ |
| C16:1 cis | g/dL lait | 1371 | 0.73 | 0.013 | [ |
| C17:0 | g/dL lait | 1371 | 0.81 | 0.003 | [ |
| C18:0 | g/dL lait | 1371 | 0.84 | 0.056 | [ |
| Total of C18:1 | g/dL lait | 1371 | 0.96 | 0.060 | [ |
| Total of C18:1 trans | g/dL lait | 1371 | 0.80 | 0.025 | [ |
| Total of C18:1 cis | g/dL lait | 1371 | 0.95 | 0.063 | [ |
| C18:1 cis-9 | g/dL lait | 1371 | 0.95 | 0.061 | [ |
| Total of C18:2 | g/dL lait | 1371 | 0.71 | 0.014 | [ |
| C18:2 cis-9, cis-12 | g/dL lait | 1371 | 0.75 | 0.011 | [ |
| C18:2 cis-9, trans-11 | g/dL lait | 1371 | 0.74 | 0.010 | [ |
| C18:3 cis-9, cis-12, cis-15 | g/dL lait | 1371 | 0.69 | 0.004 | [ |
| SFA | g/dL lait | 1371 | 0.99 | 0.072 | [ |
| MUFA | g/dL lait | 1371 | 0.97 | 0.059 | [ |
| PUFA | g/dL lait | 1371 | 0.79 | 0.021 | [ |
| UFA | g/dL lait | 1371 | 0.97 | 0.064 | [ |
| SCFA | g/dL lait | 1371 | 0.93 | 0.025 | [ |
| MCFA | g/dL lait | 1371 | 0.97 | 0.104 | [ |
| LCFA | g/dL lait | 1371 | 0.95 | 0.110 | [ |
| Branched FA | g/dL lait | 1371 | 0.77 | 0.013 | [ |
| Total of omega-3 | g/dL lait | 1371 | 0.68 | 0.006 | [ |
| Total of omega-6 | g/dL lait | 1371 | 0.74 | 0.014 | [ |
| Total of odd FA | g/dL lait | 1371 | 0.84 | 0.016 | [ |
| Total of trans FA | g/dL lait | 1371 | 0.82 | 0.029 | [ |
| Lactoferrin | mg/L milk | 5541 | 0.55 | 139.01 | [ |
| Casein alpha-s1 | g/L milk | 135 | 0.81 | 0.58 | NP |
| Casein alpha-s2 + K | g/L milk | 135 | 0.81 | 0.36 | NP |
| Casein beta | g/L milk | 133 | 0.75 | 1.13 | NP |
| Lactalbumin | g/L milk | 138 | 0.38 | 0.15 | NP |
| Lactoglobuline | g/L milk | 134 | 0.81 | 0.25 | NP |
| Total of casein | g/L milk | 133 | 0.84 | 1.56 | NP |
| Sodium (Na) | mg/kg of milk | 1019 | 0.44 | 50.98 | [ |
| Calcium (Ca) | mg/kg of milk | 1094 | 0.82 | 53.38 | [ |
| Phosphorus (P) | mg/kg of milk | 1083 | 0.75 | 58.71 | [ |
| Potassium (K) | mg/kg of milk | 1090 | 0.55 | 88.14 | [ |
| Magnesium (Mg) | mg/kg of milk | 1124 | 0.72 | 6.53 | [ |
1 N = number of records. 2 RMSE = root mean squared error. 3 Ref = reference. 4 NP = not published.
Performances of discriminant analysis performed on the three created traits related to the grazing season. The validation set contained 721,192 records.
| TenFold Stratified Cross-Validation | Validation | ||||
|---|---|---|---|---|---|
| N | AUC 1 | Sensitivity | Specificity | Accuracy | |
| GRASS1 | 533,786 | 94.71 ± 0.07 | 86.78 ± 0.17 | 88.61 ± 0.17 | 89.66 |
| GRASS2 | 397,409 | 96.21 ± 0.08 | 88.41 ± 0.27 | 90.84 ± 0.19 | 90.95 |
| GRASS3 | 265,876 | 97.43 ± 0.08 | 90.55 ± 0.18 | 92.99 ± 0.21 | 91.40 |
1 AUC = area under the curve.
Figure 2Yearly evolution of the ratio of predicted unsaturated to saturated fatty acids and the predicted content of C18:2 cis-9, trans-11 and C18:3 cis-9, cis-12, cis-15 in milk fat.
Figure 3Yearly evolution of the predicted content of short-, medium-, and long-chain fatty acids in milk fat.
Figure 4Scores of the Variable Importance in Projection (VIP) for all predictors and models. Black bars represent the most important traits (FA = fatty acids).
Figure 5Evolution of the probability of belonging to the GRASS modality for the 11 studied years based on the validation set (N = 2,365,113 records).
Figure 6Dendrogram established from hierarchical clustering using the average monthly probability values for belonging to the GRASS1 cluster.
Descriptive statistics for the farm clustering (SFA = saturated fatty acids, MUFA = monounsaturated fatty acids, and LCFA = long-chain fatty acids).
| Cluster Name | N Sample | % Sample | Milk | % Fat | % Protein | g/100 g Fat | ||
|---|---|---|---|---|---|---|---|---|
| kg/Day | g/100 g | g/100 g | SFA | MUFA | LCFA | |||
| 1 | 4239 | 16.41 | 26.46 | 4.14 | 3.46 | 69.14 | 26.73 | 39.55 |
| 2 | 1498 | 5.80 | 25.98 | 3.96 | 3.40 | 67.24 | 28.41 | 41.94 |
| 3 | 3316 | 12.84 | 26.20 | 4.09 | 3.43 | 68.22 | 27.72 | 40.68 |
| 4 | 2483 | 9.61 | 26.90 | 4.33 | 3.55 | 70.24 | 25.35 | 37.28 |
| 5 | 3092 | 11.97 | 26.37 | 4.24 | 3.49 | 69.26 | 26.52 | 39.18 |
| 6 | 1321 | 5.11 | 25.51 | 3.89 | 3.38 | 66.85 | 29.01 | 42.34 |
| 7 | 989 | 3.83 | 25.22 | 3.74 | 3.36 | 65.49 | 30.35 | 44.52 |
| 8 | 257 | 0.99 | 28.34 | 0.25 | 3.54 | 50.05 | 45.55 | 63.37 |
| 9 | 3902 | 15.11 | 25.49 | 4.12 | 3.44 | 67.91 | 27.54 | 40.87 |
| 10 | 1954 | 7.56 | 25.45 | 3.95 | 3.40 | 66.31 | 28.82 | 42.29 |
| 11 | 1660 | 6.43 | 25.41 | 4.04 | 3.41 | 67.27 | 28.55 | 42.01 |
| 12 | 1121 | 4.34 | 27.75 | 4.21 | 3.48 | 67.53 | 27.19 | 38.63 |
Figure 7Dendrogram established from hierarchical clustering using the average monthly probability values for belonging to the GRASS1 cluster.