Literature DB >> 36229739

Construction of miRNA-mRNA networks for the identification of lung cancer biomarkers in liquid biopsies.

Elena Espinosa Garcia1, Macarena Arroyo Varela2, Rafael Larrosa Jimenez1, Josefa Gomez-Maldonado3, Manuel Angel Cobo Dols4, M Gonzalo Claros4,5,6,7, Rocio Bautista Moreno4,6.   

Abstract

Lung cancer (LC) is the most common cause of cancer death worldwide mostly due to the low survival rate: 75% of cases are identified in advanced stages. In this study, the list of useful biomarkers to make an early diagnosis using liquid biopsies was expanded. A total of 30 samples of LC were analyzed to define potential miRNA biomarkers in liquid biopsies for LC. The biomarkers have been identified in interaction networks miRNA-mRNA. The potential biomarkers have been then validated in large cohorts. A total of 15 candidate miRNAs, that regulate the repression of 30 mRNAs, have been identified as a specific functional interaction network for squamous carcinoma, while the specific functional interaction network of adenocarcinoma consists of four candidate miRNAs that seem to handle the repression of five mRNA. Inspection of expression levels in larger cohorts validates the usefulness of the 11 candidates as biomarkers in liquid biopsies. The 11 candidate miRNAs found could be utilized to form diagnostic predictive biomarkers for LC in liquid biopsies.
© 2022. The Author(s).

Entities:  

Keywords:  Biomarker; High-throughput sequencing; Lung cancer; RNA-seq; miRNA

Year:  2022        PMID: 36229739     DOI: 10.1007/s12094-022-02969-7

Source DB:  PubMed          Journal:  Clin Transl Oncol        ISSN: 1699-048X            Impact factor:   3.340


  3 in total

1.  Identification of differentially expressed genes in cervical cancer by bioinformatics analysis.

Authors:  Yanshan Ge; Chaoyang Zhang; Songshu Xiao; Lin Liang; Shan Liao; Yanqi Xiang; Ke Cao; Hongxiang Chen; Yanhong Zhou
Journal:  Oncol Lett       Date:  2018-06-12       Impact factor: 2.967

2.  Breast cancer exosomes contribute to pre-metastatic niche formation and promote bone metastasis of tumor cells.

Authors:  Xinxin Yuan; Niansong Qian; Shukuan Ling; Yuheng Li; Weijia Sun; Jianwei Li; Ruikai Du; Guohui Zhong; Caizhi Liu; Guotao Yu; Dengchao Cao; Zizhong Liu; Yinbo Wang; Zhihong Qi; Yingpeng Yao; Fang Wang; Jingjing Liu; Shanshan Hao; Xiaoyan Jin; Yinlong Zhao; Jianqi Xue; Dingsheng Zhao; Xingcheng Gao; Shuai Liang; Youyou Li; Jinping Song; Shuyang Yu; Yingxian Li
Journal:  Theranostics       Date:  2021-01-01       Impact factor: 11.556

3.  Upregulated miRNA-182-5p expression in tumor tissue and peripheral blood samples from patients with non-small cell lung cancer is associated with downregulated Caspase 2 expression.

Authors:  Lu Yang; Ye Dou; Zhuxin Sui; Hui Cheng; Xia Liu; Qinglu Wang; Peifu Gao; Yin'e Qu; Ming Xu
Journal:  Exp Ther Med       Date:  2019-10-02       Impact factor: 2.447

  3 in total

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