Literature DB >> 36227554

A Machine Learning-Based Approach Using Multi-omics Data to Predict Metabolic Pathways.

Aakaanksha Kaul1, Maryanne Varghese1, Vidya Niranjan2, Akshay Uttarkar1.   

Abstract

The integrative method approaches are continuously evolving to provide accurate insights from the data that is received through experimentation on various biological systems. Multi-omics data can be integrated with predictive machine learning algorithms in order to provide results with high accuracy. This protocol chapter defines the steps required for the ML-multi-omics integration methods that are applied on biological datasets for its analysis and the visual interpretation of the results thus obtained.
© 2023. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Algorithms; Integration; Machine learning; Multi-omics; Supervised learning; Unsupervised learning

Mesh:

Year:  2023        PMID: 36227554     DOI: 10.1007/978-1-0716-2617-7_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  42 in total

1.  moCluster: Identifying Joint Patterns Across Multiple Omics Data Sets.

Authors:  Chen Meng; Dominic Helm; Martin Frejno; Bernhard Kuster
Journal:  J Proteome Res       Date:  2015-12-30       Impact factor: 4.466

2.  A Bayesian integrative genomic model for pathway analysis of complex traits.

Authors:  Brooke L Fridley; Steven Lund; Gregory D Jenkins; Liewei Wang
Journal:  Genet Epidemiol       Date:  2012-03-28       Impact factor: 2.135

3.  Multi-platform metabolomics assays for human lung lavage fluids in an air pollution exposure study.

Authors:  Izabella Surowiec; Masoumeh Karimpour; Sandra Gouveia-Figueira; Junfang Wu; Jon Unosson; Jenny A Bosson; Anders Blomberg; Jamshid Pourazar; Thomas Sandström; Annelie F Behndig; Johan Trygg; Malin L Nording
Journal:  Anal Bioanal Chem       Date:  2016-04-25       Impact factor: 4.142

4.  Fast dimension reduction and integrative clustering of multi-omics data using low-rank approximation: application to cancer molecular classification.

Authors:  Dingming Wu; Dongfang Wang; Michael Q Zhang; Jin Gu
Journal:  BMC Genomics       Date:  2015-12-01       Impact factor: 3.969

5.  60 years ago, Francis Crick changed the logic of biology.

Authors:  Matthew Cobb
Journal:  PLoS Biol       Date:  2017-09-18       Impact factor: 8.029

Review 6.  Onco-Multi-OMICS Approach: A New Frontier in Cancer Research.

Authors:  Sajib Chakraborty; Md Ismail Hosen; Musaddeque Ahmed; Hossain Uddin Shekhar
Journal:  Biomed Res Int       Date:  2018-10-03       Impact factor: 3.411

7.  Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets.

Authors:  Ricard Argelaguet; Britta Velten; Damien Arnol; Sascha Dietrich; Thorsten Zenz; John C Marioni; Florian Buettner; Wolfgang Huber; Oliver Stegle
Journal:  Mol Syst Biol       Date:  2018-06-20       Impact factor: 11.429

Review 8.  Using machine learning approaches for multi-omics data analysis: A review.

Authors:  Parminder S Reel; Smarti Reel; Ewan Pearson; Emanuele Trucco; Emily Jefferson
Journal:  Biotechnol Adv       Date:  2021-03-29       Impact factor: 14.227

9.  Predicting network activity from high throughput metabolomics.

Authors:  Shuzhao Li; Youngja Park; Sai Duraisingham; Frederick H Strobel; Nooruddin Khan; Quinlyn A Soltow; Dean P Jones; Bali Pulendran
Journal:  PLoS Comput Biol       Date:  2013-07-04       Impact factor: 4.475

10.  Metabolomics coupled with pathway analysis characterizes metabolic changes in response to BDE-3 induced reproductive toxicity in mice.

Authors:  Ziheng Wei; Jing Xi; Songyan Gao; Xinyue You; Na Li; Yiyi Cao; Liupeng Wang; Yang Luan; Xin Dong
Journal:  Sci Rep       Date:  2018-04-03       Impact factor: 4.379

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