Literature DB >> 36212995

A universal approach to gene expression engineering.

Rahmi Lale1, Lisa Tietze1, Maxime Fages-Lartaud1, Jenny Nesje1, Ingerid Onsager1, Kerstin Engelhardt1, Che Fai Alex Wong1, Madina Akan1,2, Niklas Hummel1,3,4, Jörn Kalinowski5, Christian Rückert5, Martin Frank Hohmann-Marriott1,6.   

Abstract

In this study, we provide a universal approach to Gene Expression Engineering (GeneEE) for creating artificial expression systems. GeneEE leads to the generation of artificial 5' regulatory sequences (ARES) consisting of promoters and 5' untranslated regions. The ARES lead to the successful recruitment of RNA polymerase, related sigma factors and ribosomal proteins that result in a wide range of expression levels. We also demonstrate that by engaging native transcription regulators, GeneEE can be used to generate inducible promoters. To showcase the universality of the approach, we demonstrate that 200-nucleotide (nt)-long DNA with random composition can be used to generate functional expression systems in six bacterial species, Escherichia coli, Pseudomonas putida, Corynebacterium glutamicum, Thermus thermophilus, Streptomyces albus and Streptomyces lividans, and the eukaryote yeast Saccharomyces cerevisiae.
© The Author(s) 2022. Published by Oxford University Press.

Entities:  

Keywords:  5′ untranslated region; artificial promoters; transcription; translation

Year:  2022        PMID: 36212995      PMCID: PMC9534286          DOI: 10.1093/synbio/ysac017

Source DB:  PubMed          Journal:  Synth Biol (Oxf)        ISSN: 2397-7000


  60 in total

1.  Ultrahigh-throughput screening in drop-based microfluidics for directed evolution.

Authors:  Jeremy J Agresti; Eugene Antipov; Adam R Abate; Keunho Ahn; Amy C Rowat; Jean-Christophe Baret; Manuel Marquez; Alexander M Klibanov; Andrew D Griffiths; David A Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-08       Impact factor: 11.205

2.  The ribosome binding site calculator.

Authors:  Howard M Salis
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

3.  Synthetic promoter design in Escherichia coli based on a deep generative network.

Authors:  Ye Wang; Haochen Wang; Lei Wei; Shuailin Li; Liyang Liu; Xiaowo Wang
Journal:  Nucleic Acids Res       Date:  2020-07-09       Impact factor: 16.971

4.  A 10-min method for preparation of highly electrocompetent Pseudomonas aeruginosa cells: application for DNA fragment transfer between chromosomes and plasmid transformation.

Authors:  Kyoung-Hee Choi; Ayush Kumar; Herbert P Schweizer
Journal:  J Microbiol Methods       Date:  2005-06-28       Impact factor: 2.363

Review 5.  How to achieve high-level expression of microbial enzymes: strategies and perspectives.

Authors:  Long Liu; Haiquan Yang; Hyun-dong Shin; Rachel R Chen; Jianghua Li; Guocheng Du; Jian Chen
Journal:  Bioengineered       Date:  2013-04-25       Impact factor: 3.269

6.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites.

Authors:  J Shine; L Dalgarno
Journal:  Proc Natl Acad Sci U S A       Date:  1974-04       Impact factor: 11.205

7.  Model-driven generation of artificial yeast promoters.

Authors:  Benjamin J Kotopka; Christina D Smolke
Journal:  Nat Commun       Date:  2020-04-30       Impact factor: 14.919

8.  Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.

Authors:  Katharina Pfeifer-Sancar; Almut Mentz; Christian Rückert; Jörn Kalinowski
Journal:  BMC Genomics       Date:  2013-12-17       Impact factor: 3.969

9.  Synthetic promoter library for modulation of actinorhodin production in Streptomyces coelicolor A3(2).

Authors:  Sujata Vijay Sohoni; Alessandro Fazio; Christopher T Workman; Ivan Mijakovic; Anna Eliasson Lantz
Journal:  PLoS One       Date:  2014-06-25       Impact factor: 3.240

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