| Literature DB >> 36212141 |
Partho Ghose1, Muhaddid Alavi2, Mehnaz Tabassum3, Md Ashraf Uddin2, Milon Biswas1, Kawsher Mahbub1, Loveleen Gaur4, Saurav Mallik5, Zhongming Zhao5,6.
Abstract
COVID-19 has caused over 528 million infected cases and over 6.25 million deaths since its outbreak in 2019. The uncontrolled transmission of the SARS-CoV-2 virus has caused human suffering and the death of uncountable people. Despite the continuous effort by the researchers and laboratories, it has been difficult to develop reliable efficient and stable vaccines to fight against the rapidly evolving virus strains. Therefore, effectively preventing the transmission in the community and globally has remained an urgent task since its outbreak. To avoid the rapid spread of infection, we first need to identify the infected individuals and isolate them. Therefore, screening computed tomography (CT scan) and X-ray can better separate the COVID-19 infected patients from others. However, one of the main challenges is to accurately identify infection from a medical image. Even experienced radiologists often have failed to do it accurately. On the other hand, deep learning algorithms can tackle this task much easier, faster, and more accurately. In this research, we adopt the transfer learning method to identify the COVID-19 patients from normal individuals when there is an inadequacy of medical image data to save time by generating reliable results promptly. Furthermore, our model can perform both X-rays and CT scan. The experimental results found that the introduced model can achieve 99.59% accuracy for X-rays and 99.95% for CT scan images. In summary, the proposed method can effectively identify COVID-19 infected patients, could be a great way which will help to classify COVID-19 patients quickly and prevent the viral transmission in the community.Entities:
Keywords: COVID-19; CT scan; classification; deep learning; transfer learning; x-ray
Year: 2022 PMID: 36212141 PMCID: PMC9533058 DOI: 10.3389/fgene.2022.980338
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.772
Studies evaluating DL methods for COVID-19 identification.
| Study | Sample size and type | Models | Accuracy (%) |
|---|---|---|---|
|
| 760 CT scan | CGAN, AlexNet, GoogleNet, VGGNet16, VGGNet19, ResNet50 | 82.9 |
|
| 2,482 CT scan | SqueezeNet, ResNet50, InceptionV3, ResNet101, ResNeXt50, ResNeXt101, Xception, DenseNet169, DenseNet201 | 93.7 |
|
| Real-time CT scan images | Smartphone, onboard sensors, ML models | N/A |
|
| 4,986 CT scan | DenseNet121, DenseNet201, VGG16, VGG19 | 98.8 |
|
| 337 X-Rays | nCOVnet | 98.97 |
|
| 2,905 X-Rays | mAlexNet– BiLSTM (Hybrid) architecture | 98.70 |
|
| 5,220 CT scan | Deep Learning | 96.47 |
|
| 2,064 X-Rays | Deep CNN | 99.02 |
|
| 1,200 X-Rays | Customized DNN | 99.87 |
|
| 2,541 X-Rays | RegNet Structured DL | 99.02 |
|
| 3,106 X-Rays | EfficientNetB0, VGG16, InceptionV3 | 92.93 |
FIGURE 1The proposed COVID-19 detection framework using both X-ray and CT-scan.
FIGURE 2Representative samples: (A) CT scan samples from the dataset ARIA (2021), (B) X-ray samples from the dataset Siddhartha and Santra (2020).
FIGURE 3Inside view of DenseNet169 deep learning model. This figure shows the layers architecture with layers number.
FIGURE 4Architecture of the proposed model. The top of the pre-trained DenseNet169 model was removed and then added some layers as shown in the figure for better COVID-19 detection.
FIGURE 5Confusion matrix for the proposed model: (A) confusion matrix on CT scan, (B) confusion matrix on X-rays.
FIGURE 6Loss and accuracy curves of the proposed model (Blue and yellow curves represents for CT scan images; green and purple curves ensembles for the X-Ray images).
Experimental results obtained by the proposed model for COVID-19 and normal cases on CT scan.
| Class | Performance (%) | |||
|---|---|---|---|---|
| ACC | PPV | SEN | F1-score | |
| COVID-19 | 99.96 | 100 | 99.93 | 99.98 |
| Normal | 99.94 | 99.48 | 100 | 99.99 |
FIGURE 7ROC curve of the proposed model: (A) ROC curve on CT scan images, (B) ROC curve on X-ray images.
Experimental results obtained with proposed model and different DL models on CT scan images.
| Classifier | Performance (%) | |||
|---|---|---|---|---|
| ACC | PPV | SEN | F1-score | |
| VGG16 | 95.69 | 97.25 | 95.70 | 96.70 |
| VGG19 | 94.20 | 93.70 | 96.40 | 94.55 |
| Xception | 96.70 | 98.40 | 96.20 | 97.50 |
| Inception-V2-Resnet | 96.90 | 96.64 | 97.20 | 96.50 |
| Densenet169 | 98.90 | 99.04 | 97.98 | 98.84 |
| Proposed work | 99.95 | 99.74 | 99.97 | 98.99 |
Experimental results obtained by the proposed model for COVID-19 and normal cases on X-rays.
| Class | Performance (%) | |||
|---|---|---|---|---|
| ACC | PPV | SEN | F1-score | |
| COVID-19 | 99.68 | 100 | 99.00 | 100 |
| Normal | 99.49 | 99.00 | 100 | 100 |
Experimental results obtained with proposed model and different DL models on X-ray images.
| Classifier | Performance (%) | |||
|---|---|---|---|---|
| ACC | PPV | SEN | F1-score | |
| VGG16 | 94.69 | 93.59 | 96.6 | 94.72 |
| VGG19 | 92.2 | 91.7 | 97.4 | 93.55 |
| Xception | 95.66 | 96.89 | 94.5 | 96.68 |
| Inception-V2-Resnet | 96.78 | 96.44 | 96.2 | 94.5 |
| Densenet169 | 97.8 | 97.04 | 96.98 | 95.84 |
| Proposed work | 99.59 | 99.50 | 99.50 | 100 |
FIGURE 8FPR and FNR bar graphs for the proposed model with different models.
Performance comparison of the stated COVID-19 identification model with others works on X-rays.
| Study | Data size | Performance (%) | |||
|---|---|---|---|---|---|
| ACC | PPV | SEN | F1-score | ||
|
| 500 X-Rays | 95.29 | 96.46 | 92.97 | 97.5 |
|
| 930 X-Rays | 96.60 | 95.00 | 95.00 | 95.00 |
|
| 306 X-Rays | 79.76 | – | – | – |
|
| 3314 X-Rays | 95.72 | 94.64 | 93.59 | 96.78 |
|
| 380 X-Rays | 94.70 | 97.78 | 94.00 | 95.92 |
|
| 14,194 X-Rays | 96.10 | 91.8 | 96.6 | 83.5 |
|
| 2,064 X-Rays | 99.02 | – | 99.82 | 99.92 |
|
| 336 X-Rays | 95.83 | 97.31 | 98.21 | 93.45 |
|
| 7,390 X-Rays | 99.12 | 99.27 | 97.36 | 95.36 |
|
| 18,479 X-Rays | 99.25 | 99.00 | 95.59 | 94.56 |
|
| 260 X-Rays | 96.92 | 99.22 | 100.00 | 94.20 |
| Proposed model | 3,428 X-Rays | 99.59 | 99.50 | 99.50 | 100.00 |
Performance comparison of the stated COVID-19 identification model with others works on CT scan.
| Study | Data size | Performance (%) | |||
|---|---|---|---|---|---|
| ACC | PPV | SEN | F1-score | ||
|
| 5,220 CT scan | 96.47 | 96.00 | 96.73 | 96.00 |
|
| 2,481 CT scan | 97.53 | 97.50 | 97.50 | 97.00 |
|
| 2,478 CT scan | 97.81 | 97.77 | 97.81 | 97.77 |
|
| 746 CT scan | 91.60 | 90.40 | 91.70 | 91.00 |
|
| 2,482 CT scan | 98.87 | – | – | 91.95 |
|
| 2,482 CT scan | 99.73 | 99.46 | 100 | 99.73 |
|
| 2,482 CT scans | 98.99 | 98.98 | 99.00 | 98.99 |
|
| 14,194 CT scan | 91.66 | 92.04 | 90.89 | 91.50 |
|
| 5,000 CT scan | 99.05 | 99.6 | 99.05 | 98.59 |
| Proposed model | 8,439 CT scan | 99.95 | 99.74 | 99.97 | 98.99 |