Literature DB >> 36211981

The Commoditization of AI for Molecule Design.

Fabio Urbina1, Sean Ekins1.   

Abstract

Anyone involved in designing or finding molecules in the life sciences over the past few years has witnessed a dramatic change in how we now work due to the COVID-19 pandemic. Computational technologies like artificial intelligence (AI) seemed to become ubiquitous in 2020 and have been increasingly applied as scientists worked from home and were separated from the laboratory and their colleagues. This shift may be more permanent as the future of molecule design across different industries will increasingly require machine learning models for design and optimization of molecules as they become "designed by AI". AI and machine learning has essentially become a commodity within the pharmaceutical industry. This perspective will briefly describe our personal opinions of how machine learning has evolved and is being applied to model different molecule properties that crosses industries in their utility and ultimately suggests the potential for tight integration of AI into equipment and automated experimental pipelines. It will also describe how many groups have implemented generative models covering different architectures, for de novo design of molecules. We also highlight some of the companies at the forefront of using AI to demonstrate how machine learning has impacted and influenced our work. Finally, we will peer into the future and suggest some of the areas that represent the most interesting technologies that may shape the future of molecule design, highlighting how we can help increase the efficiency of the design-make-test cycle which is currently a major focus across industries.

Entities:  

Keywords:  Artificial intelligence; design-make-test; machine learning; molecule design; recurrent neural networks

Year:  2022        PMID: 36211981      PMCID: PMC9541920          DOI: 10.1016/j.ailsci.2022.100031

Source DB:  PubMed          Journal:  Artif Intell Life Sci        ISSN: 2667-3185


  54 in total

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Authors:  S Hochreiter; J Schmidhuber
Journal:  Neural Comput       Date:  1997-11-15       Impact factor: 2.026

2.  Multiple Machine Learning Comparisons of HIV Cell-based and Reverse Transcriptase Data Sets.

Authors:  Kimberley M Zorn; Thomas R Lane; Daniel P Russo; Alex M Clark; Vadim Makarov; Sean Ekins
Journal:  Mol Pharm       Date:  2019-02-26       Impact factor: 4.939

3.  Reconfigurable system for automated optimization of diverse chemical reactions.

Authors:  Anne-Catherine Bédard; Andrea Adamo; Kosi C Aroh; M Grace Russell; Aaron A Bedermann; Jeremy Torosian; Brian Yue; Klavs F Jensen; Timothy F Jamison
Journal:  Science       Date:  2018-09-21       Impact factor: 47.728

4.  Entangled Conditional Adversarial Autoencoder for de Novo Drug Discovery.

Authors:  Daniil Polykovskiy; Alexander Zhebrak; Dmitry Vetrov; Yan Ivanenkov; Vladimir Aladinskiy; Polina Mamoshina; Marine Bozdaganyan; Alexander Aliper; Alex Zhavoronkov; Artur Kadurin
Journal:  Mol Pharm       Date:  2018-09-19       Impact factor: 4.939

Review 5.  Machine Learning for Designing Next-Generation mRNA Therapeutics.

Authors:  Sebastian M Castillo-Hair; Georg Seelig
Journal:  Acc Chem Res       Date:  2021-12-14       Impact factor: 22.384

6.  Molecular de-novo design through deep reinforcement learning.

Authors:  Marcus Olivecrona; Thomas Blaschke; Ola Engkvist; Hongming Chen
Journal:  J Cheminform       Date:  2017-09-04       Impact factor: 5.514

7.  The ChEMBL database in 2017.

Authors:  Anna Gaulton; Anne Hersey; Michał Nowotka; A Patrícia Bento; Jon Chambers; David Mendez; Prudence Mutowo; Francis Atkinson; Louisa J Bellis; Elena Cibrián-Uhalte; Mark Davies; Nathan Dedman; Anneli Karlsson; María Paula Magariños; John P Overington; George Papadatos; Ines Smit; Andrew R Leach
Journal:  Nucleic Acids Res       Date:  2016-11-28       Impact factor: 16.971

8.  A de novo molecular generation method using latent vector based generative adversarial network.

Authors:  Oleksii Prykhodko; Simon Viet Johansson; Panagiotis-Christos Kotsias; Josep Arús-Pous; Esben Jannik Bjerrum; Ola Engkvist; Hongming Chen
Journal:  J Cheminform       Date:  2019-12-03       Impact factor: 5.514

9.  Generating Focused Molecule Libraries for Drug Discovery with Recurrent Neural Networks.

Authors:  Marwin H S Segler; Thierry Kogej; Christian Tyrchan; Mark P Waller
Journal:  ACS Cent Sci       Date:  2017-12-28       Impact factor: 14.553

10.  An Autonomous Chemical Robot Discovers the Rules of Inorganic Coordination Chemistry without Prior Knowledge.

Authors:  Luzian Porwol; Daniel J Kowalski; Alon Henson; De-Liang Long; Nicola L Bell; Leroy Cronin
Journal:  Angew Chem Int Ed Engl       Date:  2020-05-18       Impact factor: 15.336

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