Literature DB >> 36204536

Code and Data Sharing Practices in the Radiology Artificial Intelligence Literature: A Meta-Research Study.

Kesavan Venkatesh1, Samantha M Santomartino1, Jeremias Sulam1, Paul H Yi1.   

Abstract

Purpose: To evaluate code and data sharing practices in original artificial intelligence (AI) scientific manuscripts published in the Radiological Society of North America (RSNA) journals suite from 2017 through 2021. Materials and
Methods: A retrospective meta-research study was conducted of articles published in the RSNA journals suite from January 1, 2017, through December 31, 2021. A total of 218 articles were included and evaluated for code sharing practices, reproducibility of shared code, and data sharing practices. Categorical comparisons were conducted using Fisher exact tests with respect to year and journal of publication, author affiliation(s), and type of algorithm used.
Results: Of the 218 included articles, 73 (34%) shared code, with 24 (33% of code sharing articles and 11% of all articles) sharing reproducible code. Radiology and Radiology: Artificial Intelligence published the most code sharing articles (48 [66%] and 21 [29%], respectively). Twenty-nine articles (13%) shared data, and 12 of these articles (41% of data sharing articles) shared complete experimental data by using only public domain datasets. Four of the 218 articles (2%) shared both code and complete experimental data. Code sharing rates were statistically higher in 2020 and 2021 compared with earlier years (P < .01) and were higher in Radiology and Radiology: Artificial Intelligence compared with other journals (P < .01).
Conclusion: Original AI scientific articles in the RSNA journals suite had low rates of code and data sharing, emphasizing the need for open-source code and data to achieve transparent and reproducible science.Keywords: Meta-Analysis, AI in Education, Machine LearningSupplemental material is available for this article.© RSNA, 2022.
© 2022 by the Radiological Society of North America, Inc.

Entities:  

Keywords:  AI in Education; Machine Learning; Meta-Analysis

Year:  2022        PMID: 36204536      PMCID: PMC9530751          DOI: 10.1148/ryai.220081

Source DB:  PubMed          Journal:  Radiol Artif Intell        ISSN: 2638-6100


  13 in total

Review 1.  Reproducibility in machine learning for health research: Still a ways to go.

Authors:  Matthew B A McDermott; Shirly Wang; Nikki Marinsek; Rajesh Ranganath; Luca Foschini; Marzyeh Ghassemi
Journal:  Sci Transl Med       Date:  2021-03-24       Impact factor: 17.956

2.  Reproducible Artificial Intelligence Research Requires Open Communication of Complete Source Code.

Authors:  Felipe C Kitamura; Ian Pan; Timothy L Kline
Journal:  Radiol Artif Intell       Date:  2020-07-29

3.  Preparing Radiologists to Lead in the Era of Artificial Intelligence: Designing and Implementing a Focused Data Science Pathway for Senior Radiology Residents.

Authors:  Walter F Wiggins; M Travis Caton; Kirti Magudia; Sha-Har A Glomski; Elizabeth George; Michael H Rosenthal; Glenn C Gaviola; Katherine P Andriole
Journal:  Radiol Artif Intell       Date:  2020-11-04

4.  AMERICAN ASSOCIATION OF PHYSICISTS IN MEDICINE.

Authors: 
Journal:  Med Phys       Date:  2012-12       Impact factor: 4.071

5.  Challenge to scientists: does your ten-year-old code still run?

Authors:  Jeffrey M Perkel
Journal:  Nature       Date:  2020-08       Impact factor: 49.962

6.  Assessing Radiology Research on Artificial Intelligence: A Brief Guide for Authors, Reviewers, and Readers-From the Radiology Editorial Board.

Authors:  David A Bluemke; Linda Moy; Miriam A Bredella; Birgit B Ertl-Wagner; Kathryn J Fowler; Vicky J Goh; Elkan F Halpern; Christopher P Hess; Mark L Schiebler; Clifford R Weiss
Journal:  Radiology       Date:  2019-12-31       Impact factor: 11.105

7.  PadChest: A large chest x-ray image dataset with multi-label annotated reports.

Authors:  Aurelia Bustos; Antonio Pertusa; Jose-Maria Salinas; Maria de la Iglesia-Vayá
Journal:  Med Image Anal       Date:  2020-08-20       Impact factor: 8.545

8.  Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study.

Authors:  John R Zech; Marcus A Badgeley; Manway Liu; Anthony B Costa; Joseph J Titano; Eric Karl Oermann
Journal:  PLoS Med       Date:  2018-11-06       Impact factor: 11.069

9.  MIMIC-CXR, a de-identified publicly available database of chest radiographs with free-text reports.

Authors:  Alistair E W Johnson; Tom J Pollard; Seth J Berkowitz; Nathaniel R Greenbaum; Matthew P Lungren; Chih-Ying Deng; Roger G Mark; Steven Horng
Journal:  Sci Data       Date:  2019-12-12       Impact factor: 6.444

10.  AI-RADS: An Artificial Intelligence Curriculum for Residents.

Authors:  Alexander L Lindqwister; Saeed Hassanpour; Petra J Lewis; Jessica M Sin
Journal:  Acad Radiol       Date:  2020-10-15       Impact factor: 3.173

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