| Literature DB >> 36203533 |
Si-Wei Huang1, Gang Chen1, Jian-Di Li1, Li-Ting Qin1, Zhi-Guang Huang1, Su-Ning Huang2, Wei Lu3, Jiang-Hui Zeng4, Bin-Yu Mo5, Yi-Wu Dang1, Zhu-Xin Wei6, Jia-Yuan Luo1.
Abstract
Background: Currently, the benefits of nasopharyngeal carcinoma (NPC) therapy are limited, and it is necessary to further explore possible therapeutic targets. Aryl hydrocarbon receptor nuclear translocator 2 (ARNT2) has been extensively studied in other cancer species, but little has been explored in NPC. The aim of this study was to verify the expression level of ARNT2 and its underlying mechanism in NPC.Entities:
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Year: 2022 PMID: 36203533 PMCID: PMC9532129 DOI: 10.1155/2022/9137282
Source DB: PubMed Journal: Comput Math Methods Med ISSN: 1748-670X Impact factor: 2.809
Characteristics of high-throughput datasets included in the study.
| Study | Country | platform | Cancer group | Normal control | Mean1 ± SD1 | Mean0 ± SD0 |
|---|---|---|---|---|---|---|
| GSE64634, GSE34573, GSE12452 | China, UK, USA | GPL570 | 58 | 17 | 7.83 ± 1.02 | 6.41 ± 0.91 |
| GSE68799, GSE63381, GSE102349 | China, Singapore, USA | GPL11154 | 159 | 4 | 3.50 ± 0.72 | 2.24 ± 1.25 |
| GSE13597 | UK | GPL96 | 25 | 3 | 6.18 ± 1.03 | 4.54 ± 1.08 |
| GSE39826 | UK | GPL6244 | 3 | 3 | 6.89 ± 0.04 | 4.11 ± 0.53 |
| GSE40290 | China | GPL8380 | 25 | 8 | 1.38 ± 0.96 | −0.70 ± 0.72 |
| GSE53819 | China | GPL6480 | 18 | 18 | 12.79 ± 0.92 | 11.40 ± 0.42 |
| GSE61218 | China | GPL19061 | 10 | 6 | 7.56 ± 0.56 | 4.98 ± 0.74 |
| GSE118719 | USA | GPL20301 | 7 | 4 | 5.40 ± 1.61 | 3.12 ± 0.96 |
| GSE126683 | China | GPL16956 | 3 | 3 | 6.95 ± 0.14 | 7.06 ± 0.14 |
Note: Mean1 ± SD1: nasopharyngeal carcinoma tissues; Mean0 ± SD0: nontumor tissues. SD: standard deviation.
Figure 1ARNT2 expression levels in NPC based on multiple cohorts. (a~i) Different expression levels of ARNT2 between NPC and nontumor nasopharynx samples. (j~r) Operating characteristic curves of ARNT2 mRNA expression for the differentiation of nasopharynx carcinoma from nontumor tissues.
Figure 2Comprehensive ARNT2 expression level in NPC tissues based on multiple gene chips. (a) Forest plot for assessing ARNT2 expression between NPC tissues and nontumor tissues. (b) Analysis of the publication bias detection in the comprehensive analysis evaluating the expression pattern of ARNT2 in NPC. (c) Summary receiver operating characteristic curve of the distinguishing capability of ARNT2 for cancer from noncancerous samples. (d) Sensitivity analysis of standard mean deviation (random effects model). (e) Fagan's nomogram.
Figure 3Potential gene annotations and prospective pathways of ARNT2-related target genes in NPC. (a~c) Gene Ontology based on intersection of upregulated DEGs, ARNT2 positively correlated CEGs, and target genes. (d) Kyoto Encyclopedia of Genes and Genomes based on intersection of upregulated DEGs, ARNT2 positively correlated CEGs, and target genes. (e~g) Gene Ontology based on intersection of downregulated DEGs, ARNT2 negatively correlated CEGs, and target genes. (h) Kyoto Encyclopedia of Genes and Genomes based on intersection of downregulated DEGs, ARNT2 negatively correlated CEGs, and target genes. Note: count refers to the number of genes enriched in the pathway.
Figure 4ARNT2 ChIP-seq information. (a) ChIP-seq for the full length of PTGS2 transcription. (b) A magnified view of the peak region. (c) Predictive motif of ARNT2.
Figure 5Comprehensive PTGS2 expression level and correlation analysis of ARNT2 and PTGS2 expression in NPC. (a) Forest plot for evaluating PTGS2 expression between NPC specimens and nontumor specimens. (b) Summary receiver operating characteristic curve of the distinguishing capability of PTGS2 for cancer from noncancerous tissues. (c) Forest plot for assessing correlation of ARNT2 and PTGS2 expression level. (d~l) A correlation analysis of ARNT2 and PTGS2 expression levels based on 9 datasets.
Figure 6Analysis of immune infiltration and the correlation with ARNT2. (a) Comparison of various immune cell infiltration between the NPC and control groups. (b) Different immune-infiltrating landscape of low and high ARNT2 expression group in NPC samples. (c~h) Linear correlation between ARNT2 and six types of immune cell infiltration fraction.