| Literature DB >> 36199913 |
Kana Okuma1, Kanako Kono1, Machiko Otaka1, Aya Ebara1, Ayano Odachi1, Hidetaka Tokuno1, Hiroaki Masuyama1.
Abstract
Purpose: The present study aimed to characterize the gut microbiota of individuals with premenstrual syndrome. Patients andEntities:
Keywords: 16S rRNA; Collinsella; gut microbiota; premenstrual syndrome
Year: 2022 PMID: 36199913 PMCID: PMC9529230 DOI: 10.2147/IJWH.S377066
Source DB: PubMed Journal: Int J Womens Health ISSN: 1179-1411
Figure 1Subject screening (flow chart for target group selection). Database 1: Women aged 24 to 49 years living in Japan who suffer from PMS among the subjects selected by the gut microbiota examination and analysis services offered by Symbiosis Solutions. Database 2: Women aged 24 to 49 years in the same age range as those with PMS among the data analyzed by the Japan Agricultural Frontier Development Organization.
Overview of Analysis Target Groups
| PMS | Control | p-value | |
|---|---|---|---|
| Number of Sample | 24 | 144 | |
| Age | 35.88 (5.36) | 38.87 (6.53) | 0.021 |
| BMI | 20.99 (3.75) | 20.65 (1.46) | 0.676 |
| Rice | 3.39 (1.20) | 4.16 (0.90) | 0.003 |
| Breads | 2.64 (1.00) | 2.73 (1.04) | 0.792 |
| Noodles | 2.14 (0.71) | 2.06 (0.48) | 0.395 |
| Potatoes | 2.19 (0.51) | 2.34 (0.68) | 0.268 |
| Seafood | 2.57 (0.90) | 2.40 (0.73) | 0.597 |
| Meat | 3.63 (0.82) | 2.99 (0.82) | 0.001 |
| Eggs | 2.83 (0.82) | 2.89 (0.85) | 0.703 |
| Miso soup | 2.50 (1.18) | 3.21 (0.95) | 0.002 |
| Green & yellow vegetables | 3.91 (0.85) | 3.12 (0.94) | 0.000 |
| Fried foods | 3.13 (0.68) | 2.72 (0.81) | 0.009 |
| Confectionery | 3.83 (1.05) | 3.33 (0.98) | 0.014 |
Notes: Values are mean (SD). The following scores were given for meals: 1, rarely; 2, 1–3 times a week; 3, 4–6 times a week; 4, at least once a day; 5, at least twice a day. Dietary scores were analyzed using the Wilcoxon rank sum test.
Abbreviation: BMI, body mass index.
Figure 2Comparison between the α-diversity of the PMS and control groups. Boxplot calculated using the Simpson indices of the two groups. Each plot shows outliers. A significant difference was observed between the groups at p <0.05.
Figure 3Comparison between the β-diversity of the PMS and control groups. The distance of the gut microbiota between the two groups was visualized using the NMDS method (stress = 0.240). Distances between samples were calculated using the Bray-Curtis index. A significant difference was observed between the groups at p <0.001 (dispersion=0.537).
Comparison of the Top 20 Bacteria Based on the Relative Abundance in the PMS and Control Groups
| Genus | Relative Abundance (%) | p-value | Effect Size | |
|---|---|---|---|---|
| PMS | Control | |||
| 3.96 | 0.88 | 0.000*** | 0.833 | |
| 5.13 | 4.06 | 0.016* | 0.513 | |
| 10.60 | 6.78 | 0.011* | 0.438 | |
| 16.73 | 16.88 | 0.276 | 0.258 | |
| 2.03 | 0.67 | 0.390 | 0.215 | |
| 1.20 | 0.27 | 0.517 | 0.194 | |
| 1.12 | 0.45 | 0.443 | 0.192 | |
| 2.60 | 3.00 | 0.331 | 0.173 | |
| 12.81 | 14.48 | 0.645 | 0.160 | |
| 0.87 | 0.63 | 0.614 | 0.150 | |
| 0.94 | 1.05 | 0.466 | 0.095 | |
| 2.64 | 2.26 | 0.554 | 0.085 | |
| 0.90 | 0.95 | 0.735 | 0.082 | |
| 1.04 | 1.23 | 0.883 | −0.075 | |
| 2.59 | 1.90 | 0.747 | −0.055 | |
| 1.81 | 3.31 | 0.858 | −0.036 | |
| 2.52 | 4.15 | 0.870 | 0.022 | |
| 9.38 | 14.22 | 0.951 | −0.008 | |
| 6.56 | 7.56 | 0.927 | 0.006 | |
| 1.34 | 1.67 | 0.950 | −0.005 | |
Notes: The relative abundance values are means. The p-value was calculated using the Wilcoxon rank-sum test with Benjamini-Hochberg FDR correction. *Means p-value < 0.05 and ***Means p-value < 0.001. The effect size were caluculated by ALDEx2 pipline. †Phocaeicola is a genus of bacteria reclassified from Bacteroides in 2019.35
Figure 4Significant differences in the gut microbial abundance at the genus level between the PMS and control groups. Genera whose absolute value of effect size calculated using the ALDEx2 pipeline was 0.2 or higher. The positive and negative effect sizes are the genera with high abundance in the PMS and control groups, respectively.
Figure 5Box plot showing the genera with significant differences in abundance between the PMS and the control groups. The vertical axis shows the relative abundance, and each plot shows the outliers.