| Literature DB >> 36197256 |
Ana Gabriela Colima Fausto1, Jaqueline Topete2, Juan Ramón González García2, Teresita de Jesús Hernández Flores2,3, Sergio Yair Rodríguez Preciado4, María Teresa Magaña Torres2.
Abstract
APOB gene polymorphisms are considered risk factors for the development of dyslipidemia, hypertension, and cardiovascular disease (CVD) in several populations. In Mexico, these pathologies are frequent and studies regarding this gene are scarce. The aim of this cross-sectional study was to determined genotype, allele, and haplotype frequencies of APOB polymorphisms and performed analyses of association among the biochemical, hemodynamic, anthropometrical, and genetic variables. Blood samples were taken from 361 subjects from unselected Mexican population for biochemical analysis and for deoxyribonucleic acid extraction; besides blood pressure and body mass index (BMI) were measured. APOB polymorphisms rs934197, rs533617, rs693, and rs1042031 were genotyped by polymerase chain reaction (PCR)-restriction fragment length polymorphism; whereas, rs17240441 and c.66_67insCTGCTG were genotyped by PCR followed by electrophoresis. Genotype and allele frequencies were obtained by simple counting and deviations from Hardy-Weinberg equilibrium (HWE) were calculated by chi-square test. The effect of the polymorphisms on the quantitative variables was determined using analysis of variance, Student's t test, Pearson's and Spearman's correlations and multiple linear regression models. All the polymorphisms were within HWE. Frequencies of mutated alleles were highly heterogeneous: rs934197-T 33.6%, rs17240441-D 39.3%, c.66_67insCTGCTG-I 3.9%, rs533617-G 0.9%, rs693-T 40.5%, and rs1042031-G 17.3%. Chronic degenerative diseases were frequent in the studied population: overweight-obesity 55.1%, dyslipidemia 45.8%, and hypertension 23.5%. The association analyses showed that despite adjustments for age and sex the mutated alleles rs934197-T, rs1042031G, c.66_67-insCTGCTG-I, and rs533617-G, were related to lower values of BMI, total cholesterol (TC), systolic blood pressure, and diastolic blood pressure, respectively. All polymorphisms analyzed except rs533517 and c.66_67insCTGCTG showed high frequencies of the mutated allele, making them useful for association studies. Our results revealed that, APOB gene polymorphisms could be contributing to the development of several chronic diseases, such as essential hypertension, dyslipidemias, obesity, among others. However, specific studies with each pathology are needed to know the possible implications of the polymorphisms.Entities:
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Year: 2022 PMID: 36197256 PMCID: PMC9509198 DOI: 10.1097/MD.0000000000030457
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.817
Association studies of APOB polymorphisms.
| Polymorphism | Location | Allele | Effect |
|---|---|---|---|
| rs934197 (−516C>T) | Promoter | T | Associated with increases the transcription rate of the |
| rs17240441 (c.35_43delTGGCGCTGC) | Exon1 | D | Associated with high levels LDL-C.[ |
| c.66_67insCTGCTG | Exon1 | I | No association studies |
| rs533617 (c.5768A>G) | Exon 26 | G | Related with high levels of LDL-C during a low fat and cholesterol diet in men.[ |
| rs693 (c.7545C>T) | Exon 26 | T | Associated with higher concentrations of total cholesterol, LDL-C and triglycerides.[ |
| rs1042031 (c.12541A>G) | Exon 29 | G | Associated with elevated LDL-C and low HDL-C. It is a risk factor for primary hypertension in Mexican population.[ |
D = deletion, HDL-C = high-density lipoprotein cholesterol, I = insertion, LDL-C = low-density lipoprotein cholesterol.
Primers and enzymes used for the analysis of the APOB gene polymorphisms.
| SNP | Primer sequence 5’ to 3’ | Restriction enzyme | Electrophoretic fragments (bp) | |
|---|---|---|---|---|
| rs934197 (−516C>T) | CTCTGCTTTTCCTCGTCCG | C/C | 319 | |
| T/T | 259, 60 | |||
| rs533617 (c.5768A>G) | TGTCTTCCGTTCTGTAATGGC | A/A | 274 | |
| GGTCTTGAGTTTCCAGGTGC | G/G | 49, 225 | ||
| rs693 (c.7545C>T) | GGTTGGATTTATTGATGATGCTGT | C/C | 249 | |
| GCAAGAGTCCACCAATCAGAAATG | T/T | 367, 125 | ||
| rs1042031(c.12541A>G) | GGCCATTAGGCAAATTGATGA | G/G | 188, 73 | |
| GGAAACTGGAATCTGGGGAAG | A/A | 261 | ||
| rs17240441 | AGCTGGCGATGGACCCGC | – | §W1/W2 | 97 |
| W1/I | 103 | |||
| D/W2 | 88 | |||
| D/I | 94 | |||
| rs17240441 | – | 376 | ||
bp = base pairs, SNP = single-nucleotide polymorphism.
rs17240441 (c.35_43del9bp): D = allele with deletion, W1 = allele without deletion or reference sequence allele.
c.66_67insCTGCTG: I = allele with insertion, W2 = allele without insertion or reference sequence allele.
Primers used for sequencing both polymorphisms. §Haplotype combination obtained with the 2 polymorphisms. bp = base pairs.
Genotypic and allelic frequencies of 6 polymorphisms in the APOB gene in Mexican population.
| n = 168 individuals | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Polymorphism | rs934197C>T | rs533617A>G | rs693C>T | rs1042031G>A | ||||||||||||||
| n | % | n | % | n | % | n | % | n | % | n | % | |||||||
| Genotype | CC | 75 | 44.6 | W1W1 | 64 | 38.1 | W2W2 | 155 | 92.3 | AA | 165 | 98.2 | CC | 64 | 38.1 | GG | 116 | 69 |
| CT | 73 | 43.5 | W1D | 76 | 45.2 | W2I | 13 | 7.7 | AG | 3 | 1.8 | CT | 72 | 42.9 | GA | 46 | 27.4 | |
| TT | 20 | 11.9 | DD | 28 | 16.7 | II | 0 | 0 | GG | 0 | 0 | TT | 32 | 19 | AA | 6 | 3.6 | |
| .73 | .5 | .6 | .91 | .15 | .59 | |||||||||||||
| n = 336 chromosomes | ||||||||||||||||||
| n | % | n | % | n | % | n | % | n | % | n | % | |||||||
| Allele | C | 223 | 66.4 | W1 | 204 | 60.7 | W2 | 323 | 96.1 | A | 333 | 99.1 | C | 200 | 59.5 | G | 278 | 82.7 |
| T | 113 | 33.6 | D | 132 | 39.3 | I | 13 | 3.9 | G | 3 | .9 | T | 136 | 40.5 | A | 58 | 17.3 | |
P value of Hardy Weinberg Equilibrium.
rs17240441 (c.35_43del9bp): D = allele with deletion, W1 = allele without deletion or reference sequence allele.
c.66_67insCTGCTG: I = allele with insertion, W2 = allele without insertion or reference sequence allele.
Haplotypes at the APOB gene locus and their frequencies observed in Mexican population.
| Haplotype | rs934197 C>T | rs533617 | rs693 | rs1042031 | Chromosomes | |||
|---|---|---|---|---|---|---|---|---|
| W2>I | A>G | C>T | G>A | n | % | |||
| 1 | C | W1 | W2 | A | C | G | 122 | 32.5 |
| 2 | T | D | W2 | A | T | G | 88 | 23.5 |
| 3 | C | W1 | W2 | A | C | A | 45 | 12 |
| 4 | C | W1 | W2 | A | T | G | 33 | 8.8 |
| 5 | C | D | W2 | A | T | G | 18 | 4.8 |
| 6 | C | D | W2 | A | C | G | 17 | 4.5 |
| 7 | T | D | W2 | A | C | G | 11 | 2.9 |
| 8 | C | W1 | I | A | C | A | 8 | 2.1 |
| 9 | T | W1 | W2 | A | T | G | 7 | 1.9 |
| 10 | C | W1 | I | A | C | G | 4 | 1.1 |
| 11 | T | W1 | W2 | A | C | G | 4 | 1.1 |
| 12 | T | W1 | W2 | A | C | A | 4 | 1.1 |
| 13 | T | D | W2 | A | C | A | 3 | .8 |
| 14 | T | D | W2 | A | T | A | 3 | .8 |
| 15 | C | W1 | W2 | A | T | A | 2 | .5 |
| 16 | C | W1 | I | A | T | G | 1 | .27 |
| 17 | C | W1 | W2 | G | C | G | 1 | .27 |
| 18 | C | W1 | I | G | C | G | 1 | .27 |
| 19 | T | W1 | W2 | A | T | A | 1 | .27 |
| 20 | C | D | W2 | A | C | A | 1 | .27 |
| 21 | T | W1 | W2 | G | C | G | 1 | .27 |
| Total | 375 | 100 | ||||||
rs17240441 (c.35_43del9bp): D = allele with deletion, W1 = allele without deletion or reference sequence allele.
c.66-67insCTGCTG: I = allele with insertion, W2 = allele without insertion or reference sequence allele.
Biochemical and anthropometric characteristics of the studied population.
| Variable | n | Mean ± SD | Reference values | |
|---|---|---|---|---|
| BMI (kg/m2) | 361 | 26.2 ± 5.6 | 18.5–24.9 | |
| Total cholesterol (mg/dL) | 358 | 182.3 ± 30.7 | 26.8 | <200 |
| Triglycerides (mg/dL) | 358 | 140.88 ± 91.02 | 17.3 | <200 |
| HDL-C (mg/dL) | 357 | 46.3 ± 11.4 | 27.7 | >40 |
| LDL-C (mg/dL) | 358 | 108.0 ± 34.4 | 21.2 | <130 |
| Glucose (mg/dL) | 310 | 91.8 ± 30.7 | 11.3 | <126 |
| Uric acid (mg/dL) | 269 | 5.1 ± 1.5 | 12.6 | <7.0 |
| Creatinine (mg/dL) | 269 | .84 ± .21 | 0.52–1.2 |
Abbreviations: BMI = body mass index, HDL-C = high-density lipoprotein cholesterol, LDL-C = low-density lipoprotein cholesterol.
55.1% overweight-obesity and 6.7% low weight.
Percentage of individuals that showed values different from those of reference.
0.74% high creatinine levels and 4.1% low creatinine levels.
Significant correlations between the quantitative variables.
| Variable* | Age | BMI | TC | TG | HDLC | Glucose | Uric acid | Creatinine | SBP | DBP | TG/HDL |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Age | * | .024 | <.001 | .001 | |||||||
| BMI | * | <.001 | .005 | .001 | <.001 | <.001 | <.001 | <.001 | |||
| TC | * | <.001 | .015 | .006 | |||||||
| TG | .401 | .333 | * | <.001 | .001 | <.001 | .011 | <.001 | <.001 | <.001 | |
| HDLC | .256 | .361 | * | .021 | <.001 | <.001 | .002 | <.001 | |||
| Glucose | .220 | .323 | .317 | .229 | * | .029 | <.001 | ||||
| Uric acid | .492 | .421 | .509 | .228 | * | <.001 | .029 | .005 | <.001 | ||
| Creatinine | .263 | .363 | .473 | * | .008 | <.001 | |||||
| SBP | .472 | .500 | .241 | .452 | .233 | * | <.001 | <.001 | |||
| DBP | .342 | .505 | .536 | .305 | .296 | .281 | .731 | * | <.001 | ||
| TG/HDLC | .396 | .243 | .913 | .630 | .446 | .482 | .353 | .410 | .536 | * |
BMI = body mass index, DBP = diastolic blood pressure, HDLC = high-density lipoprotein cholesterol, SBP = systolic blood pressure, TC = total cholesterol, TG = triglycerides.
*Above and below the diagonal the significant P values and correlation values are shown, respectively.
Effect of APOB gene polymorphisms on quantitative variables studied in Mexican population.
| Polymorphism | Variable | Genotype/allele | Genotype/allele | |||
|---|---|---|---|---|---|---|
| rs533617 | DBP (mm Hg) | AA | 77.9 | AG | 65.0 | .04 |
| rs934197 | BMI (kg/m2) | C | 27.8 | T | 26.3 | .02 |
| rs1042031G>A | TC (mg/dL) | G | 186.1 | A | 171.9 | .02 |
| rs533617A>G | DBP (mmHg) | A | 77.8 | G | 65.0 | .04 |
| Polymorphism | Variable | Correlation coefficient (rho) | ||||
| rs934197C>T | BMI (kg/m2) | –.212 | .021 | |||
| rs1042031G>A | TC (mg/dL) | –.186 | .037 | |||
| rs533617A>G | DBP (mm Hg) | –.191 | .05 | |||
BMI = body mass index, DBP = diastolic blood pressure, TC = total cholesterol.
Linear regression models.
| Variable | Allele | Constant | Beta |
|
|---|---|---|---|---|
| TC (mg/dL) | rs1042031-A | 188.1 | −14.2 | .02 |
| BMI (kg/m2) | rs934197-T | 27.7 | −4.0 | <.001 |
| rs17240441-D | 3.0 | .003 | ||
| DBP (mm Hg) | rs533617-G | 66.2 | −13.1 | .03 |
BMI = body mass index, DBP = diastolic blood pressure, TC = total cholesterol.