Literature DB >> 36190249

Draft Genome Sequences and Antimicrobial Resistance Genes of Five Staphylococcus aureus Strains Isolated from Bovine Milk.

Shoaib Ashraf1, Sohail Naushad2, Wei Si1,3, Muhammad Bilal1, Muhammad Ijaz4, Hongsheng Huang2, Xin Zhao1.   

Abstract

Staphylococcus aureus is one of the most important bacterial pathogens causing bovine mastitis, which leads to huge economic losses worldwide. Here, we report draft genome sequences and antimicrobial resistance gene profiles of five Staphylococcus aureus strains that were isolated from bovine milk in Pakistan.

Entities:  

Year:  2022        PMID： 36190249      PMCID： PMC9584340          DOI： 10.1128/mra.00756-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  8 in total

1.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

2.  Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Authors:  Konstantin Okonechnikov; Ana Conesa; Fernando García-Alcalde
Journal:  Bioinformatics       Date:  2015-10-01       Impact factor: 6.937

3.  Genomic Analysis of Bovine Staphylococcus aureus Isolates from Milk To Elucidate Diversity and Determine the Distributions of Antimicrobial and Virulence Genes and Their Association with Mastitis.

Authors:  Sohail Naushad; Diego B Nobrega; S Ali Naqvi; Herman W Barkema; Jeroen De Buck
Journal:  mSystems       Date:  2020-07-07       Impact factor: 6.496

4.  Fast and accurate long-read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2010-01-15       Impact factor: 6.937

5.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

6.  SKESA: strategic k-mer extension for scrupulous assemblies.

Authors:  Alexandre Souvorov; Richa Agarwala; David J Lipman
Journal:  Genome Biol       Date:  2018-10-04       Impact factor: 13.583

7.  CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database.

Authors:  Brian P Alcock; Amogelang R Raphenya; Tammy T Y Lau; Kara K Tsang; Mégane Bouchard; Arman Edalatmand; William Huynh; Anna-Lisa V Nguyen; Annie A Cheng; Sihan Liu; Sally Y Min; Anatoly Miroshnichenko; Hiu-Ki Tran; Rafik E Werfalli; Jalees A Nasir; Martins Oloni; David J Speicher; Alexandra Florescu; Bhavya Singh; Mateusz Faltyn; Anastasia Hernandez-Koutoucheva; Arjun N Sharma; Emily Bordeleau; Andrew C Pawlowski; Haley L Zubyk; Damion Dooley; Emma Griffiths; Finlay Maguire; Geoff L Winsor; Robert G Beiko; Fiona S L Brinkman; William W L Hsiao; Gary V Domselaar; Andrew G McArthur
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

Review 8.  Diversity and pathogenesis of Staphylococcus aureus from bovine mastitis: current understanding and future perspectives.

Authors:  Bruno Campos; Amy C Pickering; Lis Souza Rocha; Ananda Pereira Aguilar; Mary Hellen Fabres-Klein; Tiago Antônio de Oliveira Mendes; J Ross Fitzgerald; Andrea de Oliveira Barros Ribon
Journal:  BMC Vet Res       Date:  2022-03-24       Impact factor: 2.741
  8 in total

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