Literature DB >> 36190231

Metagenome-Assembled Genome of Acidibrevibacterium fodinaquatile FLA01 from Fumarole Sediments from the Los Azufres Geothermal Field.

Hermes H Bolivar-Torres1, Roberto Marín-Paredes1, Cristal Ramos-Madrigal1, Luis E Servín-Garcidueñas1.   

Abstract

The Los Azufres geothermal field contains diverse microbial communities inhabiting thermal springs whose bacterial genomic diversity is being analyzed. Here, we describe a metagenome-assembled genome of Acidibrevibacterium fodinaquatile FLA01 obtained from fumarole sediment sequencing data. The genome contained genes for carbon fixation, osmotic shock, and heavy metal resistance.

Entities:  

Year:  2022        PMID： 36190231      PMCID： PMC9583776          DOI： 10.1128/mra.00823-22

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  14 in total

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Authors:  David W Mount
Journal:  CSH Protoc       Date:  2007-07-01

2.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

3.  GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.

Authors:  Shunichi Kosugi; Hideki Hirakawa; Satoshi Tabata
Journal:  Bioinformatics       Date:  2015-08-10       Impact factor: 6.937

4.  Sealer: a scalable gap-closing application for finishing draft genomes.

Authors:  Daniel Paulino; René L Warren; Benjamin P Vandervalk; Anthony Raymond; Shaun D Jackman; Inanç Birol
Journal:  BMC Bioinformatics       Date:  2015-07-25       Impact factor: 3.169

5.  CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.

Authors:  Donovan H Parks; Michael Imelfort; Connor T Skennerton; Philip Hugenholtz; Gene W Tyson
Journal:  Genome Res       Date:  2015-05-14       Impact factor: 9.043

6.  Versatile genome assembly evaluation with QUAST-LG.

Authors:  Alla Mikheenko; Andrey Prjibelski; Vladislav Saveliev; Dmitry Antipov; Alexey Gurevich
Journal:  Bioinformatics       Date:  2018-07-01       Impact factor: 6.937

7.  TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes.

Authors:  Jan P Meier-Kolthoff; Joaquim Sardà Carbasse; Rosa L Peinado-Olarte; Markus Göker
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

8.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

9.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971

10.  JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.

Authors:  Michael Richter; Ramon Rosselló-Móra; Frank Oliver Glöckner; Jörg Peplies
Journal:  Bioinformatics       Date:  2015-11-16       Impact factor: 6.937
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